PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525813.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 342aa    MW: 35338.5 Da    PI: 6.3078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525813.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11150195555
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     h+++Er RR+ri +++  L+el+P+ +      K +Ka++L + ++Y+k Lq
  XP_010525813.1 150 HSIAERLRRERIAERMKALQELVPNgN------KTDKASMLDEIIDYVKFLQ 195
                     99***********************55......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-17143204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-13143199No hitNo description
PROSITE profilePS5088817.187145194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-16148204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-9150195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-14151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MNSSLLTPSS SSSSHIQTPA NFDHDDFLDH IFSSAAPWPS VADDDGSVPL PSSDVQQQQQ  60
QIMMMPLPSL SNDVVDGSVQ ALYNGFSGSL PFHLPQGPGG GMMNQGQGQA PETAAPQKSA  120
SATTATIGGT KSIGPKPKVR AGRGKATDPH SIAERLRRER IAERMKALQE LVPNGNKTDK  180
ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA SVPSHISEGS GGERAPPGGS TAANSGGRDS  240
LTMTEHQVAK LMEEDMGSAM QYLQGKGLCL MPISLATAIS TATCHSRNPL LTGEGGGPSS  300
PNVSVMTVQS TNTTAPAMGN GNGVGEGSSS SAVKDTPSVT KP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154159RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525813.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937111e-79AB493711.1 Arabidopsis thaliana At4g30980 mRNA for hypothetical protein, partial cds, clone: RAAt4g30980.
GenBankAF4886011e-79AF488601.1 Arabidopsis thaliana clone bHLH069 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525813.10.0PREDICTED: transcription factor bHLH66
SwissprotQ9ZUG91e-135BH066_ARATH; Transcription factor bHLH66
TrEMBLR0HCZ61e-145R0HCZ6_9BRAS; Uncharacterized protein
STRINGXP_010525813.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.11e-102LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]