PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525920.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 507aa    MW: 57956.5 Da    PI: 10.198
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525920.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.92.7e-1623981395
                    TT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3 13 sgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                    ++ l +p kf+++h +g  ++++t +l++  s ++Wevk+  ++++    +t+GWk+F+ +++ + gDf+vF+++g+  f  +v+
  XP_010525920.1 23 HNFLNIPVKFFQKHiEG-RTGNMTAKLRSdVSYKTWEVKM--DGRR----FTGGWKDFAVDHDFRIGDFIVFRYEGNLVF--HVT 98
                    56799*********644.57999*****96788*******..9998....9**********************9986555..555 PP
2B369.16.1e-22149240699
                     ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +++++l+++r  +pk fa+++g+++ +  ++ l++e+g sW+++l+ r ++g++++ +GW +F++ang k+g f+ Fk+++ +++++v++++ k
  XP_010525920.1 149 VTASNLRLDRRFVPKGFARSNGLEN-RWCEIDLMNEHGSSWTLYLRRRATDGQVYIVRGWTSFCQANGFKAGSFCKFKMVR-NGTRPVIQLCPK 240
                     688999***************9886.5569***************99999999*************************987.78889**99986 PP
3B347.43.5e-15288380198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k  ++++ l++g+l+lp +f++++g+k  +s+ +tl+d+ g +W  +l   k+++ ++++   ++F kang+k g++++++l++  ++++ ++
  XP_010525920.1 288 FLKLNLTPSILRTGQLRLPTRFMSSNGIK--KSVNITLMDKYGVEWLSYLHLVKGQQLFYIS--CRDFIKANGVKKGETFTLELIW-GDKTPIFR 377
                     889999********************988..7899***************777777778887..*********************9.77779998 PP

                     EE- CS
              B3  96 vfr 98 
                     ++ 
  XP_010525920.1 378 FCP 380
                     885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-198105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.8E-229105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.82911103IPR003340B3 DNA binding domain
CDDcd100175.78E-1812100No hitNo description
SMARTSM010193.8E-2314103IPR003340B3 DNA binding domain
PfamPF023628.7E-112392IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-19139240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-21144243IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.057144241IPR003340B3 DNA binding domain
SMARTSM010192.9E-28145241IPR003340B3 DNA binding domain
PfamPF023621.0E-20148240IPR003340B3 DNA binding domain
CDDcd100173.24E-20149239No hitNo description
Gene3DG3DSA:2.40.330.108.2E-15282381IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-16283380IPR015300DNA-binding pseudobarrel domain
CDDcd100172.66E-13286380No hitNo description
PfamPF023629.0E-16288380IPR003340B3 DNA binding domain
SMARTSM010191.6E-21288382IPR003340B3 DNA binding domain
PROSITE profilePS508639.615288382IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MADPDSVSLS KHHFFQPLLP GFHNFLNIPV KFFQKHIEGR TGNMTAKLRS DVSYKTWEVK  60
MDGRRFTGGW KDFAVDHDFR IGDFIVFRYE GNLVFHVTGF GPSCCNLQYS SSSHDNETNS  120
HEHTGNDSRK EKKARKNLKT GSKYTCLEVT ASNLRLDRRF VPKGFARSNG LENRWCEIDL  180
MNEHGSSWTL YLRRRATDGQ VYIVRGWTSF CQANGFKAGS FCKFKMVRNG TRPVIQLCPK  240
EPSHNTDNTE EGSEAIERKS CSSKPKSARG SSKRKEGRAP ASSGQHRFLK LNLTPSILRT  300
GQLRLPTRFM SSNGIKKSVN ITLMDKYGVE WLSYLHLVKG QQLFYISCRD FIKANGVKKG  360
ETFTLELIWG DKTPIFRFCP EIQQEEKGTE TMADVNALKR RTHETVQTRT AAEKPLSEAE  420
VKAHKRVRVR DPEDRPNHQD DWDTDSTTRM TSGTASESSR RTRSNPITKA KQNITDTLTA  480
VRQFREVLDT KERNLDAVLR ELDAFGM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1398402KRRTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525920.10.0PREDICTED: B3 domain-containing protein REM3-like isoform X1
STRINGXP_010525920.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.12e-99B3 family protein