PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525937.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family TALE
Protein Properties Length: 259aa    MW: 29530.4 Da    PI: 6.9969
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525937.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.64.4e-082072402154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_010525937.1 207 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 240
                     569*****************************87 PP
2ELK26.61.4e-09161182122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++++++++++++E++
  XP_010525937.1 161 ELKHELKQGFKEKIVDIREEIL 182
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037901.1E-10132IPR005540KNOX1
SMARTSM012552.4E-7134IPR005540KNOX1
SMARTSM012565.5E-2645100IPR005541KNOX2
PfamPF037911.2E-195199IPR005541KNOX2
PfamPF037894.2E-6161182IPR005539ELK domain
PROSITE profilePS512139.446161181IPR005539ELK domain
SMARTSM011880.0021161182IPR005539ELK domain
PROSITE profilePS5007111.693181244IPR001356Homeobox domain
SMARTSM003893.5E-11183248IPR001356Homeobox domain
SuperFamilySSF466892.14E-16183248IPR009057Homeodomain-like
CDDcd000863.22E-11184243No hitNo description
Gene3DG3DSA:1.10.10.601.3E-25188245IPR009057Homeodomain-like
PfamPF059202.1E-18201240IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MYEQLLAAHV ACLRIATPVD QLQRIDAQLG QSDAVAAKYS GLCKSRGVCL ENKELDHFMT  60
HYVLLLCSFK EQLQHHVRVH AMEAVMACWE IEQSLQSLTG LGASAGESNG TTMSDDEDDD  120
QVESEVNPYD VNSDSPDCLT GFGPLVPTER ERSLMERVRQ ELKHELKQGF KEKIVDIREE  180
ILRKRRAGKL PGDTTSVLKA WWQAHSKWPY PTEEDKAKLV QETGLQLKQI NNWFINQRKR  240
NWHSNSPSSS ALSKNKRRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237258RKRNWHSNSPSSSALSKNKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525937.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525937.10.0PREDICTED: homeobox protein knotted-1-like 5
SwissprotP480021e-149KNAT5_ARATH; Homeobox protein knotted-1-like 5
TrEMBLA0A178UZP81e-147A0A178UZP8_ARATH; Homeobox protein knotted-1-like 5
TrEMBLA0A178V1Z31e-147A0A178V1Z3_ARATH; KNAT5
TrEMBLA0A384LCR41e-147A0A384LCR4_ARATH; KNAT5
STRINGXP_010525937.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32040.11e-139KNOTTED1-like homeobox gene 5