PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010526071.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 264aa MW: 30824.6 Da PI: 9.8829

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010526071.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.8	1.6e-27	96	184	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++vGF +r+ + ++s+++g+i r+f C+keg+ + + k + r++r++tr gCka+++vk +++gkw++tk+++eHnH+l+ XP_010526071.1 96 FYDDYARRVGFVMRVMSCRRSEKDGRILARRFGCNKEGHCLSIRGKFGTVRKPRPSTREGCKAMIHVKYDRSGKWVITKFVKEHNHPLV 184 9*************************************99999989*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-25	96	184	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MERPWEIFTK STTTLTYLSI LAHLIYKRDS QVPFPLSLSL SLSLSLRAWT EQKKILLRVD 60 SMEVTATGST VTYLEDSIAE PREGMEFDSE DAAKMFYDDY ARRVGFVMRV MSCRRSEKDG 120 RILARRFGCN KEGHCLSIRG KFGTVRKPRP STREGCKAMI HVKYDRSGKW VITKFVKEHN 180 HPLVVSQREA RQIMDEKDKK IQELNIELRN KKRLCAAYKE QLDAFAKIVE EHCNHLSKKV 240 QNVVNNLKEF ESLEHELLQH RRAM

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010526071.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010526071.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	D7LJZ7	1e-118	D7LJZ7_ARALL; Far-red impaired responsive family protein
STRING	XP_010526071.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-121	FAR1 family protein