PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526108.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 262aa    MW: 28566 Da    PI: 4.9879
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526108.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-184292155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+ +++g
  XP_010526108.1 42 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAAMSIKG 92
                    68*****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-134292IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-3243101IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-2143100IPR016177DNA-binding domain
PROSITE profilePS5103223.39343100IPR001471AP2/ERF domain
SMARTSM003802.5E-3743106IPR001471AP2/ERF domain
PRINTSPR003679.7E-114455IPR001471AP2/ERF domain
CDDcd000186.10E-3344102No hitNo description
PRINTSPR003679.7E-116682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVESTHQGSD IECSTTNLSP PFPSPSPGEK RKRVIGSPVK HPVYRGVRMR SWGKWVSEIR  60
EPRKKSRIWL GTFPTAEMAA RAHDVAAMSI KGSSAILNFP ELSGSFPRPV SLSPKDIQAA  120
SAKAALIDPK TTPLHSQAKT TPLQPKDKTT AFDLRDQTMP CQATSETSET TSWSSASTLT  180
SSFSDVDLSD ITVPDELGEI VELPSLGTSL GELRSEFMLF DSLDSDGWVY TSPLLNSMED  240
LTYGNASLFG PVSAEESFSW NY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-2036101773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00467DAPTransfer from AT4G32800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526108.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526108.10.0PREDICTED: ethylene-responsive transcription factor ERF043
SwissprotQ9M0802e-62ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A0D3BLR51e-68A0A0D3BLR5_BRAOL; Uncharacterized protein
STRINGXP_010526108.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.11e-62ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]