PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526144.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 217aa    MW: 24152.8 Da    PI: 10.102
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526144.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-184287147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd +l ++v+++G+++W++I +++  gR++k+c++rw + 
   XP_010526144.1 42 KGPWSAEEDRILTRLVEKYGPRNWSLIGKHIK-GRSGKSCRLRWCNQ 87
                     79*****************************9.***********985 PP
2Myb_DNA-binding60.14.9e-1996138347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
   XP_010526144.1  96 PFTAEEDETILAAHERYGNR-WATIARLLP-GRTDNAVKNHWNST 138
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.0763792IPR017930Myb domain
SuperFamilySSF466898.99E-3339135IPR009057Homeodomain-like
SMARTSM007174.9E-174190IPR001005SANT/Myb domain
PfamPF002495.7E-184287IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-264395IPR009057Homeodomain-like
CDDcd001677.58E-154486No hitNo description
SMARTSM007171.7E-1693141IPR001005SANT/Myb domain
PROSITE profilePS5129421.79694143IPR017930Myb domain
CDDcd001672.28E-1296139No hitNo description
PfamPF002498.0E-1696138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2396142IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDVTMSSYRC GSPTSSSSGS SSSDTSNTHK NSPSREKPGR VKGPWSAEED RILTRLVEKY  60
GPRNWSLIGK HIKGRSGKSC RLRWCNQLSP AVEHRPFTAE EDETILAAHE RYGNRWATIA  120
RLLPGRTDNA VKNHWNSTLR RRARERRQTQ TQMQREEEVM TALTLAPPGS GGYGGGGGGG  180
RTEEGVTAEF WETMKEVIAR EVREYVSSTF TSGSGFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-45411433105MYB PROTO-ONCOGENE PROTEIN
1h88_C8e-453814354159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-453814354159MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-45411433105C-Myb DNA-Binding Domain
1msf_C6e-45411433105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526144.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526144.11e-159PREDICTED: transcriptional activator Myb-like
SwissprotO231603e-56MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A0D2R0I61e-89A0A0D2R0I6_GOSRA; Uncharacterized protein
STRINGXP_010526144.11e-159(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM145531122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37260.11e-56myb domain protein 73
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]