PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526169.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 314aa    MW: 34432.3 Da    PI: 5.3929
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526169.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.67.2e-18203237135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  XP_010526169.1 203 CMHCETEKTPQWRTGPMGPKTLCNACGVRYKSGRL 237
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.3E-841293IPR016679Transcription factor, GATA, plant
SMARTSM004015.5E-18197247IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.95E-15201261No hitNo description
PROSITE profilePS5011411.332201233IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.7E-15201235IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.68E-14202249No hitNo description
PROSITE patternPS003440203228IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15203237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEQQTHDEIL VSGNGPDHFV VDDLLDFSNG DDDGAFDDVN DPSVVADSCN SSSACERSFP  60
DAAEISGDLC VIPCEDLAEL EWLSNFVEES FSSEDQDKLH LLSGFKDPRP DPSSQTRPGP  120
VISQNDDAPV PARARSKRSR AAASTWPSTS ILAVDNPFSP TGSSHVADVV APDTDVVCHK  180
KKARRKDSSA VAVAADGGSV RRCMHCETEK TPQWRTGPMG PKTLCNACGV RYKSGRLVPE  240
YRPAASPTFV MTKHSNSHRK VLELRQQKDT VVLRRTEELL TQLRRERVLM GDVRSNGDDF  300
LIHQHVGPHF GQLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526169.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526169.10.0PREDICTED: GATA transcription factor 9
SwissprotO826321e-97GATA9_ARATH; GATA transcription factor 9
TrEMBLV4MBT32e-99V4MBT3_EUTSA; GATA transcription factor
STRINGXP_010526169.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-67GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]