PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526336.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 213aa    MW: 25037.3 Da    PI: 8.7837
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526336.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM127.31.2e-39221501128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     lppG+rF+Ptdee++  yL +k++g+k++  + i ++++y++ P++++     +++ ++e+yfF++ ++ky++g+r++r++  gyWkatgk++e+
  XP_010526336.1  22 LPPGVRFRPTDEEIILSYLLPKLRGEKIPP-NQILRIKLYEHGPERIEVmfrIYREFDEEVYFFTTIQRKYKNGERPRRTVPGGYWKATGKEREI 115
                     79**************************99.77**************94353334456799********************************** PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +s +++l+g kk+Lv+y+g+ pkgekt+ v+heyr+
  XP_010526336.1 116 FS-GETLIGFKKSLVLYRGDPPKGEKTNYVIHEYRA 150
                     **.999****************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-4515176IPR003441NAC domain
PROSITE profilePS5100543.92122176IPR003441NAC domain
PfamPF023654.4E-2023149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MQSTANDGED NRSQRWCDFS TLPPGVRFRP TDEEIILSYL LPKLRGEKIP PNQILRIKLY  60
EHGPERIEVM FRIYREFDEE VYFFTTIQRK YKNGERPRRT VPGGYWKATG KEREIFSGET  120
LIGFKKSLVL YRGDPPKGEK TNYVIHEYRA YDPERSRPGP DGRKLDEHVM CRMYQKAVKA  180
IAMGSDKFYA CIGHHDYDGH TLSSYDTHQN KCE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-352118016169NO APICAL MERISTEM PROTEIN
1ut4_B2e-352118016169NO APICAL MERISTEM PROTEIN
1ut7_A2e-352118016169NO APICAL MERISTEM PROTEIN
1ut7_B2e-352118016169NO APICAL MERISTEM PROTEIN
4dul_A2e-352118016169NAC domain-containing protein 19
4dul_B2e-352118016169NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526336.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526336.11e-160PREDICTED: NAC transcription factor 29-like
STRINGXP_010526336.11e-159(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.17e-41NAC-like, activated by AP3/PI