PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526564.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 286aa    MW: 31564.3 Da    PI: 7.4507
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526564.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.7e-09756154
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    r++ +  rE+ RR+++N+ f +L  +l ++     +K++K +iL+ +++ +k+L
  XP_010526564.1  7 RKMQKADREKLRREKLNEHFVQLGNVLDPD----RPKNDKGTILTDTIQLLKEL 56
                    6778899*******************9997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.874656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.31E-7760No hitNo description
PfamPF000101.6E-6756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-13775IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-12779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-61262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDSVVARKMQ KADREKLRRE KLNEHFVQLG NVLDPDRPKN DKGTILTDTI QLLKELTSEV  60
NKLKSEYTAL TEESRELTQE KNDLREEKAS LKSDIENLNI QYQQRLRAMS PWAAAMDHTV  120
MMAPPPPSFP YPMPMAMPPG SIPLHPSMQP YTFFGNQNPG VIPAPCPTYM PYMPPNTVVE  180
QQSVHVPQNP QAVNSSREGG TNLSRESKAK NAEDSNDVAT ELELKTPGST SDKDSTKQRK  240
TKRNGKRNCS TREESSSSSK CSSCPSGRDS SSGSVAGGQN PDGAEA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526564.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526564.10.0PREDICTED: transcription factor bHLH121
SwissprotQ9LT231e-133BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A1I9LN901e-131A0A1I9LN90_ARATH; Basic helix-loop-helix (BHLH) DNA-binding superfamily protein
STRINGXP_010526564.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-128bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]