PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010526572.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

BBR-BPC

Protein Properties

Length: 280aa MW: 31527.7 Da PI: 9.4574

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010526572.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	65.2	2.8e-20	1	116	1	98
GAGA_bind 1 mdddgsre..rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalve 76 m++ g++e r k+ yy+ ++++l +++++ms++aerda+i+ern a+s+k +a+a+rd a++qrdkal+er++al++ XP_010526572.1 1 MESGGQYEngRYKPdYYKgahsmwnlmpqhqikeQHNALV--MNKKIMSILAERDAAIHERNEAISAKGEALAARDDALQQRDKALSERDNALMQ 93 888999888999999999*******9888765446666..99*********************************************** PP GAGA_bind 77 rdnkllalllvensla.salpvg 98 rdn+l+al++ en l s ++++ XP_010526572.1 94 RDNALAALQYGENHLPsSRNGMA 116 ********9987653334444 PP
2	GAGA_bind	251.6	4.9e-77	136	280	155	301
GAGA_bind 155 rakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstk 249 +++++k++k+kk+kk ++++ k+ + ++ +++++s+d++ln ++++e+t+PvP+C+CtG+ +qCYkWGnGGWqS+CCttt+S+yPLP++++ XP_010526572.1 136 ETANTKKSKRKKEKK-PPVQSKDLNLRA-GKKCRTDWESTDVGLNLITFEETTMPVPICTCTGSAHQCYKWGNGGWQSSCCTTTLSQYPLPQMPN 228 334445555555555.444444444443.479************************************************************* PP GAGA_bind 250 rrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 +r++R++grKmS+++f++lL++LaaeG+dls+pvDLk +WA+HGtn+++ti+ XP_010526572.1 229 KRHSRMGGRKMSGSVFTRLLSRLAAEGHDLSCPVDLKYYWARHGTNRYITIK 280 *************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	8.3E-145	1	280	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	3.0E-91	21	280	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MESGGQYENG RYKPDYYKGA HSMWNLMPQH QIKEQHNALV MNKKIMSILA ERDAAIHERN 60 EAISAKGEAL AARDDALQQR DKALSERDNA LMQRDNALAA LQYGENHLPS SRNGMAEEAV 120 RAGETHIPEA FPISTETANT KKSKRKKEKK PPVQSKDLNL RAGKKCRTDW ESTDVGLNLI 180 TFEETTMPVP ICTCTGSAHQ CYKWGNGGWQ SSCCTTTLSQ YPLPQMPNKR HSRMGGRKMS 240 GSVFTRLLSR LAAEGHDLSC PVDLKYYWAR HGTNRYITIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010526572.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010526572.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4-like
Refseq	XP_010526573.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE4-like
Swissprot	Q8S8C6	1e-154	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	V4M9X7	1e-156	V4M9X7_EUTSA; Uncharacterized protein
STRING	XP_010526572.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4090	26	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	1e-153	basic pentacysteine 4