PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526695.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 262aa    MW: 28434.8 Da    PI: 9.4323
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526695.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.3e-18127181256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++t+eq   Lee F+++++++ +++  LA++l+L  rqV vWFqNrRa+ k
  XP_010526695.1 127 RKKLRLTNEQSALLEESFKQHSTLNPKQKLALARQLNLRPRQVEVWFQNRRARTK 181
                     788899***********************************************98 PP
2HD-ZIP_I/II122.71.8e-39127215189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl++eq++lLEesF+++++L+p++K +lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk++y++l++en+rL++e +eL++
  XP_010526695.1 127 RKKLRLTNEQSALLEESFKQHSTLNPKQKLALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCYETLTDENRRLQRELRELKA 215
                     69*************************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-17110181IPR009057Homeodomain-like
PROSITE profilePS5007117.135123183IPR001356Homeobox domain
SuperFamilySSF466891.43E-18125192IPR009057Homeodomain-like
SMARTSM003891.7E-15125187IPR001356Homeobox domain
PfamPF000461.4E-15127181IPR001356Homeobox domain
CDDcd000864.37E-15127184No hitNo description
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
PfamPF021839.2E-10183217IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.7E-22183226IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGFDDSCSTG LSLGLGLTPT TSNSYNHAVK RSSSNVVNHP SLEPSLTLSL SGDSYMKNTA  60
DAPAVTVAGG GNHQLYRQAS SQSGVSSFSS GRVKRARDIG GGGDGEEAER VSSRTSGQED  120
EEGVSARKKL RLTNEQSALL EESFKQHSTL NPKQKLALAR QLNLRPRQVE VWFQNRRART  180
KLKQTEVDCE FLKKCYETLT DENRRLQREL RELKARKLAQ PFYMRMPPAT LTMCPSCERL  240
GAYGAGDGGG SSGGISAASV VE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175183RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526695.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526695.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-104HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A061DHW31e-107A0A061DHW3_THECC; Homeodomain-leucine zipper protein HD4
STRINGXP_010526695.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-64HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]