PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526733.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family G2-like
Protein Properties Length: 354aa    MW: 39633.2 Da    PI: 5.2484
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526733.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.61e-31210264256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     +r+rW+peLH++F++a+++LGGs++AtPk+i+elm+v+gLt+++vkSHLQkYR++
  XP_010526733.1 210 QRRRWSPELHRKFIDALQRLGGSKVATPKQIRELMQVQGLTNDEVKSHLQKYRIH 264
                     8****************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-28206267IPR009057Homeodomain-like
PROSITE profilePS5129413.285206266IPR017930Myb domain
SuperFamilySSF466891.02E-17207267IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-25210264IPR006447Myb domain, plants
PfamPF002491.5E-8211262IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MVETDTVRRM ELNLDLGVYC LPKPLSEFLH EVSQINDCPS ALSEIHGFVD RLEEERRKID  60
VFKRELPLCM LLLNEAIGRL KEEATRCAEA GDGSAVEGSN RKFDDGGGAK VENDKKNWMS  120
SAQLWISNSD SQMQSRNEEE EEDRSAPPNP SPSCNFANKG GEFPPFSRLY GSCHPPPLTL  180
MPPASVMVVN CRVDRHQPSK PSNQNQKKEQ RRRWSPELHR KFIDALQRLG GSKVATPKQI  240
RELMQVQGLT NDEVKSHLQK YRIHVRKHPI SRADETVETA GGLHQIPCKD KDSESQSDSP  300
QGPLIRRGFS GDGGGLSSEA AEGEDDNEDD EEAVSDGQSR KNATNMKEEM DLKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-15211262354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-15211262354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-15211262354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-15211262354Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00475DAPTransfer from AT4G37180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526733.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526733.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotF4JRB01e-112HHO5_ARATH; Transcription factor HHO5
TrEMBLR0GZX21e-113R0GZX2_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010526733.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-117G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]