PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526758.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 346aa    MW: 38579.4 Da    PI: 7.2681
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526758.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH277.9e-09196242555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_010526758.1 196 HSLAERVRREKISHKMKCLQDLVPGC----DKATGKAGMLDEIINYVQSLQ 242
                     999**********************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-17189260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.99E-9189246No hitNo description
PROSITE profilePS5088815.18191241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-17192258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6196242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MLGGLVSPES LSLTSAMDMS VLERFRWLQQ QQQVLSQNRD SNNNTPPELL QMLQPPASSN  60
GRELSYVGNI DVLSHFPMVG SDFESNDNRD FVLLPHHSVD GCISRTSSCQ IEPRATEGQI  120
ATALNKRKSE LKTGEEHTDK KIKMEAETEP IKKGKSNISN AETSSDTSKE TSKASEVRKP  180
DYIHVRARRG QATDRHSLAE RVRREKISHK MKCLQDLVPG CDKATGKAGM LDEIINYVQS  240
LQRQVEFLSM KLAVLNPEQE FDIVESSAKQ FQQAYFTNLP TIWKPSSSVV TDQGLASFPL  300
NHQGSLDFSL TTPNQAPSLN AKPRTLSRWE TCSLSLHNAS GLGFQY
Functional Description ? help Back to Top
Source Description
UniProtAtypical bHLH transcription factor that acts as positive regulator of cell elongation downstream of multiple external and endogenous signals by direct binding to the promoters and activation of the two expansin genes EXPA1 and EXPA8, encoding cell wall loosening enzymes. Transcriptional activity is inhibited when binding to the bHLH transcription factor IBH1. {ECO:0000269|PubMed:23221598}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526758.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526758.10.0PREDICTED: transcription factor HBI1-like
SwissprotQ9ZPW31e-114HBI1_ARATH; Transcription factor HBI1
TrEMBLA0A1J3HJB11e-122A0A1J3HJB1_NOCCA; Transcription factor HBI1
STRINGXP_010526758.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34062363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18300.21e-105bHLH family protein