PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010526780.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

SRS

Protein Properties

Length: 292aa MW: 31429.6 Da PI: 7.0495

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010526780.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	182	2.4e-56	81	212	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 s t+sC+dCGnqakk+Cah+RCRtCCksrgfdCathv+stW+p+akrrerqqq+ a+ + ++ +kr+r+ s s+ XP_010526780.1 81 SVTISCRDCGNQAKKGCAHMRCRTCCKSRGFDCATHVRSTWIPVAKRRERQQQTMAT------EGGANIPKRPRDA-----S--STG-------A 155 6789********************************************9998775......3456789999985.....2..222.......2 PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + s+P+ev+seavfrcvr+s+vdd++ ++aYqt ++i+GhvfkGiLydqG+++ XP_010526780.1 156 LDMGEPSFPAEVNSEAVFRCVRMSGVDDENGQYAYQTMMNINGHVFKGILYDQGPQS 212 3345567*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.7E-56	83	211	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.9E-26	85	127	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	5.4E-26	163	210	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010051	Biological Process	xylem and phloem pattern formation
GO:0010252	Biological Process	auxin homeostasis
GO:0048479	Biological Process	style development
GO:0048480	Biological Process	stigma development

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MAGIFPLGSG RGNEEEDQRK TGLWFRNTNP SASSSDNQQI WQLEQEPPPQ QMFMQQQQQQ 60 SLDLYPAGQI DVSDLATSWR SVTISCRDCG NQAKKGCAHM RCRTCCKSRG FDCATHVRST 120 WIPVAKRRER QQQTMATEGG ANIPKRPRDA SSTGALDMGE PSFPAEVNSE AVFRCVRMSG 180 VDDENGQYAY QTMMNINGHV FKGILYDQGP QSSHNISCGS GGSDHQSSSA GIGAGGNPFN 240 PAAAAAGASS SHAVAGGSSS PMFVDPSAYY GSSNLSMFMP AGTQFYNQNP RS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010526780.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010526780.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 2-like isoform X1
Swissprot	O65517	6e-95	SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBL	V4ME11	1e-104	V4ME11_EUTSA; Uncharacterized protein
STRING	XP_010526782.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36260.1	1e-77	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]