PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010526890.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 253aa MW: 28193.8 Da PI: 4.2054

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010526890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.4	3.3e-10	80	123	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++Er R++ +N+ + +Lr+l+P+ +Kl+ +i A++YIk+Lq XP_010526890.1 80 MAERMRMRLLNDNLYKLRSLIPNV-----TKLDRKSIMLGAIDYIKKLQ 123 79*******************8.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.4E-14	70	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.433	73	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.50E-11	76	127	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.0E-12	78	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-11	79	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.0E-7	80	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MIDENNGGEG FLPNNKQMDM DMLTEVAEDD VPLGMEALTS SMGNVALNTH HVAECGNPSL 60 PVKEQQDVDD EEEQGENQMM AERMRMRLLN DNLYKLRSLI PNVTKLDRKS IMLGAIDYIK 120 KLQKEVKELQ EELEKNSDTE DGSDQHRQGG GMSSVNGADN ELMMKGGGVF EPQVELAMVK 180 VDGSYEFSVK VICEYKPGGF TKLMEALDSL ELVVINANTT RSLDLVSNVF MAERKDGEMV 240 QVDHVKDSQL QIT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Plays a crucial role in tapetum development. Required for male fertility and pollen differentiation, especially during the post-meiotic transcriptional regulation of microspore development within the developing anther (PubMed:12535353). Binds E-box regions in the AHL16/TEK promoter. {ECO:0000269\|PubMed:12535353, ECO:0000269\|PubMed:24804694}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010526890.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010526886.1	0.0	PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
Refseq	XP_010526887.1	0.0	PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
Refseq	XP_010526889.1	0.0	PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
Refseq	XP_010526890.1	0.0	PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
Swissprot	Q9ZVX2	8e-56	AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBL	D7L887	4e-55	D7L887_ARALL; Uncharacterized protein
STRING	XP_010526885.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	3e-47	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Xu J, et al. ABORTED MICROSPORES Acts as a Master Regulator of Pollen Wall Formation in Arabidopsis. Plant Cell, 2014. 26(4): p. 1544-1556 [PMID:24781116] Qian H, et al. Trace concentrations of imazethapyr (IM) affect floral organs development and reproduction in Arabidopsis thaliana: IM-induced inhibition of key genes regulating anther and pollen biosynthesis. Ecotoxicology, 2015. 24(1): p. 163-71 [PMID:25348600] Xiong SX, et al. The transcription factors MS188 and AMS form a complex to activate the expression of CYP703A2 for sporopollenin biosynthesis in Arabidopsis thaliana. Plant J., 2016. 88(6): p. 936-946 [PMID:27460657] Ferguson AC, et al. Biphasic regulation of the transcription factor ABORTED MICROSPORES (AMS) is essential for tapetum and pollen development in Arabidopsis. New Phytol., 2017. 213(2): p. 778-790 [PMID:27787905] Lou Y, et al. Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana. New Phytol., 2018. 217(1): p. 378-391 [PMID:28940573] Bi H,Fan W,Zhang P C4 Protein of Sweet Potato Leaf Curl Virus Regulates Brassinosteroid Signaling Pathway through Interaction with AtBIN2 and Affects Male Fertility in Arabidopsis. Front Plant Sci, 2017. 8: p. 1689 [PMID:29021807]