PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010527022.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 247aa MW: 28252.8 Da PI: 6.7211

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010527022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.8	7.4e-28	87	174	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++ GF +r+sk ++s+++g+ + r++vC+keg+r ++k++ k r+raetr+gC+a++ v+ke++gkw++tk+++eH+H+l+p XP_010527022.1 87 FYNAYATREGFVIRVSKLSRSRHDGSPIGRQLVCNKEGYRLPSKRD--KVIRQRAETRVGCRAMILVRKENSGKWVITKFVKEHTHPLMP 174 *****************************************999..999**********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.8E-26	87	174	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MDFRIENDVS AGMMGCPDGL EANTVENQNE IGQNSGQAML EQDEVHKVDP DSAERDTPVG 60 VPAMPEVPAD EPYVGQEFES EAAAHAFYNA YATREGFVIR VSKLSRSRHD GSPIGRQLVC 120 NKEGYRLPSK RDKVIRQRAE TRVGCRAMIL VRKENSGKWV ITKFVKEHTH PLMPGRVRRG 180 CIYDQYPNEH DKIQELMQQL AAEKKRAATY KRHLEMLFEQ IEQYNNSLSK RIQHIVDSVR 240 EIEQQNV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010527022.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010527022.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 1
TrEMBL	A0A1J3HF38	1e-143	A0A1J3HF38_NOCCA; Protein FAR1-RELATED SEQUENCE 5
STRING	XP_010527022.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7302	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	1e-130	FAR1 family protein