PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010527075.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 219aa MW: 25013.2 Da PI: 7.6358

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010527075.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	92.5	7e-29	15	88	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs+rd+ky++g+r+nr++ +gyWkatg dk+v + + +kk Lvfy g+ pkg kt+W+mheyrl XP_010527075.1 15 YGEKEWYFFSPRDRKYPNGSRPNRVAGRGYWKATGADKPVGN--PKPLAIKKALVFYAGKPPKGIKTNWIMHEYRL 88 4789**********************************98..7899************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.115	1	115	IPR003441	NAC domain
SuperFamily	SSF101941	8.37E-35	11	115	IPR003441	NAC domain
Pfam	PF02365	2.2E-13	19	88	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
CRFYCTFCIT DLASYGEKEW YFFSPRDRKY PNGSRPNRVA GRGYWKATGA DKPVGNPKPL 60 AIKKALVFYA GKPPKGIKTN WIMHEYRLAN VDRSLPNKNN ALRLDDWVLC RLYNKKGAIE 120 KCYCPDDVPE KDGDTKTNND VSCTDVTEHV SSSELTCEME VQSDLKWRGS EGNALDGSCI 180 YFGGLDCLRD DPFGNNHVGH RTDQFQHFQD VFMDLLKPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-45	7	121	60	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-45	7	121	60	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-45	7	121	60	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-45	7	121	60	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-45	7	121	60	171	NAC domain-containing protein 19
4dul_B	1e-45	7	121	60	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in regulation of seed germination under flooding. {ECO:0000269\|PubMed:19176720}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010527075.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By low-oxygen stress. {ECO:0000269\|PubMed:19176720}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010527075.2	1e-163	PREDICTED: protein ATAF2-like
Swissprot	Q8H115	2e-70	NA102_ARATH; NAC domain-containing protein 102
TrEMBL	A0A1Q3C1S2	2e-75	A0A1Q3C1S2_CEPFO; NAM domain-containing protein
STRING	XP_010527075.1	1e-164	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63790.1	9e-73	NAC domain containing protein 102

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]