PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010527095.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NF-YB

Protein Properties

Length: 214aa MW: 24291 Da PI: 7.1874

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010527095.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.2	7.5e-56	33	128	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +eqdrflPianv+rimkkvlP+n+kiskdaketvqecvsefisf+t+easdkcqrekrktingdd++wa++tlGfedyv plk+yl kyr++ege XP_010527095.1 33 KEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDIIWAITTLGFEDYVTPLKIYLCKYRDTEGE 127 89*******************************************************************************************99 PP NF-YB 97 k 97 k XP_010527095.1 128 K 128 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-53	26	158	IPR009072	Histone-fold
SuperFamily	SSF47113	3.49E-41	35	157	IPR009072	Histone-fold
Pfam	PF00808	3.5E-28	38	102	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.6E-18	66	84	No hit	No description
PROSITE pattern	PS00685	0	69	85	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.6E-18	85	103	No hit	No description
PRINTS	PR00615	3.6E-18	104	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MTESPENGSP GAAETNPGSP SFRNNNGNNS INKEQDRFLP IANVGRIMKK VLPGNGKISK 60 DAKETVQECV SEFISFITGE ASDKCQREKR KTINGDDIIW AITTLGFEDY VTPLKIYLCK 120 YRDTEGEKVN SPKQQQRQHP QPPQHLPQQN HHQLQDQQHN MSCGGNLYMS HHHHHHPSPF 180 LPPDHQSFPV PFSPKSIQKQ FPEQHDQIDS VGQW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-45	33	123	2	92	Transcription factor HapC (Eurofung)
4g92_B	2e-45	33	123	2	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010527095.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010527095.1	1e-160	PREDICTED: nuclear transcription factor Y subunit B-7
Swissprot	Q9SIT9	7e-98	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	V4NWB6	1e-98	V4NWB6_EUTSA; Uncharacterized protein
STRING	XP_010527095.1	1e-159	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM255	28	229

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	5e-85	nuclear factor Y, subunit B7

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]