PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527122.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ZF-HD
Protein Properties Length: 214aa    MW: 24873.7 Da    PI: 7.9042
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527122.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer84.41.3e-262577458
     ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                     rYkeC+kN Aas+G ha+DGCgEfmp   e+ ++++ kC+ CgCHRnFHR+e +
  XP_010527122.1 25 SRYKECMKNYAASMGRHATDGCGEFMPC--EDPSSDSYKCSVCGCHRNFHRKEIQ 77
                    69*************************9..45679*****************976 PP
2Homeobox16.81.2e-05148204153
                     TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     rr Rt+ft+eq + ++++ e    + ++++a++ e   +++g++ r+ +vW +N ++
  XP_010527122.1 148 RRIRTKFTQEQKDKMQSFAEkaewRMQKLDASTVELFCQEIGIERRVLRVWMHNNKY 204
                     789************98666777779****************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-152677IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.8E-242676IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.2E-232676IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.5152775IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.1E-28133209IPR009057Homeodomain-like
SuperFamilySSF466891.88E-19138208IPR009057Homeodomain-like
PROSITE profilePS500718.908145209IPR001356Homeobox domain
TIGRFAMsTIGR015652.1E-26147204IPR006455Homeodomain, ZF-HD class
CDDcd000860.00323148210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGIDVTSVSP RLEDRESEKR TVMISRYKEC MKNYAASMGR HATDGCGEFM PCEDPSSDSY  60
KCSVCGCHRN FHRKEIQCSD CSYSSFTQHN CHHAQFPSAL FDRSDHHANG LSTHSHYNIL  120
RCPNKSGSSD YNEEQDGQEK EVAPKQKRRI RTKFTQEQKD KMQSFAEKAE WRMQKLDAST  180
VELFCQEIGI ERRVLRVWMH NNKYHFAKKS DEAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-181482031873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527122.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527122.21e-162PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotQ9M9S04e-49ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A061DJE24e-56A0A061DJE2_THECC; Homeobox protein 21, putative
STRINGXP_010527122.11e-162(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-51homeobox protein 31