PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010527136.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Dof

Protein Properties

Length: 144aa MW: 15024.8 Da PI: 6.8924

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010527136.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.8	6.4e-35	14	65	2	53
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg 53 ++++++cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++P+ XP_010527136.1 14 EQEQIPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPIAV 65 57899********************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-24	4	64	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-30	16	65	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.291	18	72	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	20	56	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MTKPHGGAGL GPPEQEQIPC PRCDSTNTKF CYYNNYNFSQ PRHFCKSCRR YWTHGGTLRD 60 IPIAVAAHGS GGLIGLSGFG LGLGTGFEDV SFGLGSGVGS NGGPAAPMAA TWQLEGLENN 120 AGFVAGDCFA WPDLAISTPG NTLK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010527136.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP662922	4e-53	KP662922.1 Cajanus cajan Dof38 (Dof38) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010527136.1	1e-103	PREDICTED: dof zinc finger protein DOF3.4-like
TrEMBL	A0A2P5RUP8	3e-47	A0A2P5RUP8_GOSBA; Uncharacterized protein
STRING	XP_010527136.1	1e-102	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	1e-33	Dof family protein