PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527152.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family SRS
Protein Properties Length: 190aa    MW: 21794.3 Da    PI: 9.7382
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527152.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702115.76.5e-362313336154
          DUF702  36 athvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkeletsslPeevsseavfrcvrvs.svddgeee 129
                     + h+kstWvpa++rr+r q ++++++   ++++++  +r+     +++ +++ ++l ++     ++ +++P+e++s+avfrcvrvs svddg+++
  XP_010527152.1  23 SCHIKSTWVPAYRRRQRLQPQTQSQT---QTQTQQPLQRPV----HHHYSTNPKRLREGLGI--ITPTHFPAELNSTAVFRCVRVSsSVDDGKDQ 108
                     57**************9766555433...333344444444....45666666776666533..45566****************7369****** PP

          DUF702 130 laYqtavsigGhvfkGiLydqGlee 154
                     +aYqt+vsigGhvfkGiLydqG+e+
  XP_010527152.1 109 YAYQTTVSIGGHVFKGILYDQGPED 133
                     ***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.0E-3323132IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016244.3E-2882131IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MPFYDADTRQ VHHQWASFVA GASCHIKSTW VPAYRRRQRL QPQTQSQTQT QTQQPLQRPV  60
HHHYSTNPKR LREGLGIITP THFPAELNST AVFRCVRVSS SVDDGKDQYA YQTTVSIGGH  120
VFKGILYDQG PEDEQRIIST VHPRHHHHHH HHQRQEFLLP SSSSCPLMTT TSPFTAFMSG  180
TEFSPPRQKP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527152.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527152.11e-139PREDICTED: protein SHI RELATED SEQUENCE 3
SwissprotQ9SJT82e-39SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBLA0A3P6GXU02e-41A0A3P6GXU0_BRAOL; Uncharacterized protein
STRINGXP_010527152.11e-139(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91882638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21400.14e-37SHI-related sequence3