PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010527164.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Nin-like

Protein Properties

Length: 240aa MW: 28052.3 Da PI: 10.7794

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010527164.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.8	1.6e-26	103	152	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++s+e+l+kyF+lpi +A+ +L+v++TvLKr+CR++GI+RWPhRkiksl XP_010527164.1 103 ARLSIEELAKYFDLPISEASTKLNVGVTVLKRKCREFGIPRWPHRKIKSL 152 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.565	87	172	IPR003035	RWP-RK domain
Pfam	PF02042	3.7E-22	105	152	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MDRNPKLRAI PTLANELWMV SKRATRPKRK ETSHIPTKEH HGAGRNSSDE PKLRKNVLKQ 60 DLNCLPDPET TSGEESRSDQ TEQQESDIMK TDKKKRAPSK HVARLSIEEL AKYFDLPISE 120 ASTKLNVGVT VLKRKCREFG IPRWPHRKIK SLISLILDLQ GEAERQREKD ETAAMAVKRR 180 KKMLEIEKKE IEEKPFMEIQ AETKRFRQDI FKRRHRATRL LRSEDSESVR GSGTFMRMRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010527164.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010527164.1	1e-175	PREDICTED: protein RKD5
Swissprot	O81791	1e-76	RKD5_ARATH; Protein RKD5
TrEMBL	A0A1P8B478	1e-74	A0A1P8B478_ARATH; RWP-RK domain-containing protein
STRING	XP_010527164.1	1e-175	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12049	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	6e-64	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]