PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527255.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 245aa    MW: 27771.6 Da    PI: 9.3665
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527255.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.13.8e-12120161351
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                      +GV++ k + +W A I++      +k+++lg+f + eeAa+++++a+ 
  XP_010527255.1 120 MRGVYY-K-NMKWQAAIKVD-----KKQIHLGTFSSQEEAARLYDRAAF 161
                     79**96.5.7*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.335108174IPR001471AP2/ERF domain
PfamPF008478.8E-7119162IPR001471AP2/ERF domain
SMARTSM003805.8E-7119176IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-10120164IPR016177DNA-binding domain
CDDcd000183.80E-12121172No hitNo description
Gene3DG3DSA:3.30.730.101.2E-8121166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVSLRRRRLL GLCCGPNGYV TPLPFLTAEE YITGVRNPDA EVYKNRGPIE GTIQPREEPE  60
EKSTVEEVLY LPSQITPAKV KPVSPGDSGS LSMFAVADPP IKRRKRHRRK QVQNQEPCLM  120
RGVYYKNMKW QAAIKVDKKQ IHLGTFSSQE EAARLYDRAA FMCGREPNFE LSEEEKRELQ  180
MQSWEEFLAN TRRTITNKKP KRRVEPSPVK TSRPATALGE LAVDEKSNPN DVSCSDGIEN  240
GSFSS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527255.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527255.10.0PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_010527256.10.0PREDICTED: ethylene-responsive transcription factor-like protein At4g13040
SwissprotQ56XP97e-71ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A1J3ITX03e-75A0A1J3ITX0_NOCCA; Ethylene-responsive transcription factor-like protein
STRINGXP_010527255.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-71ERF family protein