PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010527277.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 399aa MW: 43643.8 Da PI: 8.0977

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010527277.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.1e-09	237	284	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P + +k + Ka +L + ++Y++sLq XP_010527277.1 237 SHSLAERVRREKISERMKLLQNLVPGC----NKVNGKALMLDEIINYVQSLQ 284 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.31E-16	231	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.00E-10	231	288	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.8E-16	233	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.154	233	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-6	237	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-9	239	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence Send to blast
MDNDYCRSVG FHAPPQNLDM PSGSSLTMAN WDPPLMSSSM GADQSQAFLL SQNCWSEQSI 60 FQSALTSLVS SPATTETNSG GNTSVTGKLS SFGNTSSGEF LPYSYPWPEL NFPAMMRPIA 120 TAAAEVADVG QWNRGCGTSM SANGTVQRVE NAASLVAVGS RDGSKFSGRF PGEFSRKRRC 180 LGKGKVKESS AEVLKSTDPK KDGTNDGNPE TNGSKDENPP EKDYIHVRAR RGQATDSHSL 240 AERVRREKIS ERMKLLQNLV PGCNKVNGKA LMLDEIINYV QSLQRQVEFL SMKLASVNSC 300 LDVPMDSLMS KNITEANICP SRGQQVCKSD SPATATRFLG QRFDHSALRP FHSNTNMPPS 360 SAQQCYQNTP QFCEDDLQAF VQMGFQHNQN SHGKKRNII

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence Send to blast

MDNDYCRSVG FHAPPQNLDM PSGSSLTMAN WDPPLMSSSM GADQSQAFLL SQNCWSEQSI  60
FQSALTSLVS SPATTETNSG GNTSVTGKLS SFGNTSSGEF LPYSYPWPEL NFPAMMRPIA  120
TAAAEVADVG QWNRGCGTSM SANGTVQRVE NAASLVAVGS RDGSKFSGRF PGEFSRKRRC  180
LGKGKVKESS AEVLKSTDPK KDGTNDGNPE TNGSKDENPP EKDYIHVRAR RGQATDSHSL  240
AERVRREKIS ERMKLLQNLV PGCNKVNGKA LMLDEIINYV QSLQRQVEFL SMKLASVNSC  300
LDVPMDSLMS KNITEANICP SRGQQVCKSD SPATATRFLG QRFDHSALRP FHSNTNMPPS  360
SAQQCYQNTP QFCEDDLQAF VQMGFQHNQN SHGKKRNII

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010527277.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010527277.1	0.0	PREDICTED: transcription factor bHLH78-like isoform X1
STRING	XP_010527277.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	9e-65	bHLH family protein