PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010527285.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 286aa MW: 31533.8 Da PI: 9.8793

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010527285.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00088	25	45	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 Cp+C+++F + + H+r H XP_010527285.1 25 CPICDRTFANGKAMGGHMRAH 45 **************9999998 PP
2	zf-C2H2	11.2	0.0012	171	193	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C+++F+++ +L H +H XP_010527285.1 171 YKCVACPRVFRSSRSLGGHRASH 193 9***************9999888 PP
3	zf-C2H2	14.9	7.8e-05	223	245	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F++ L H ++H XP_010527285.1 223 FECPCCDKVFRSAQALGGHKKVH 245 89**************9999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.25	23	45	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.723	23	50	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.6E-7	24	47	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	25	45	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.58E-7	171	245	No hit	No description
SMART	SM00355	0.52	171	193	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	3.5E-4	171	194	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.824	171	198	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	173	193	IPR007087	Zinc finger, C2H2
Pfam	PF13912	2.5E-9	222	247	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.02	223	245	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.305	223	245	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	225	245	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MKMSSLLKFS PSPSSSSSST KRKICPICDR TFANGKAMGG HMRAHLAKLP LPTKPQPESA 60 PAREKSPVKT RSNSVTSKPG SSSGYCLTDK EVALCLLKLT NDVWPNGVRP VIRFPLTRGC 120 KRRGELKSSD LVDEAQDKEE DEEEEEEEED DDASFSVTRT TRSMKKSRGK YKCVACPRVF 180 RSSRSLGGHR ASHENKRAKM TSLDTSSSEE LEVDRTVGIR RVFECPCCDK VFRSAQALGG 240 HKKVHLSYLE TGTTSKPTGR NGPRASKNHA VKNAAFDLNL PAPLEY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010527285.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010527285.1	0.0	PREDICTED: zinc finger protein ZAT1
STRING	XP_010527285.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16232	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	5e-26	C2H2-like zinc finger protein