PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010527352.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 209aa MW: 24019 Da PI: 7.2554

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010527352.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.6	1.6e-26	41	132	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA+++GF vr+ + ++s +g++ r++ C+k+g++ +++k+ e+r+r ++r gCka++ vk+ek+gkw+vt++ +eHnH+l+ XP_010527352.1 41 NFYVDYARRLGFVVRMMQRRRSGIDGRTLARRLGCNKQGFSPNSQKSahLGGEKRPRHSSREGCKATILVKMEKSGKWVVTRFIKEHNHPLF 132 6*************************************99999997677899**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-25	41	132	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MDLSNGDDSG DVKLHESEMG GGETLEPYVG MEFDSEDEAR NFYVDYARRL GFVVRMMQRR 60 RSGIDGRTLA RRLGCNKQGF SPNSQKSAHL GGEKRPRHSS REGCKATILV KMEKSGKWVV 120 TRFIKEHNHP LFLTASPYNT VLADKDKQIE ELEREIGHQN QLCEAYRDRL LSLMNNVEQH 180 TEELSSRIRD IAENVKKIES ELQIHNIRT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010527352.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010527352.1	1e-156	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A1R3H4Q3	1e-92	A0A1R3H4Q3_COCAP; Uncharacterized protein
TrEMBL	A0A1R3KL35	1e-92	A0A1R3KL35_9ROSI; Uncharacterized protein
STRING	XP_010527352.1	1e-155	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	2e-84	FAR1 family protein