PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527787.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 609aa    MW: 65959.7 Da    PI: 6.0377
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527787.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS451.26.6e-1382406001374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++l+ a+al++++  la +++ +m+++a+yf+eALa+r++r    l+   pp +    ++s + + +  f+e +P+lkf+h
  XP_010527787.1 240 LVHALMACAEAVQKNNLTIAEALVKQIGALAVSQAGAMRKVATYFAEALARRIYR----LC---PPHNPV--DHSLSGTLQMHFYESCPYLKFAH 325
                     689****************************************************....33...333333..34444445556************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIleaveg++rvHiiDf+++qGlQWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+ +g +La++Ae+++v+fe++ +va++l+dle
  XP_010527787.1 326 FTANQAILEAVEGKKRVHIIDFSMNQGLQWPALMQALALRPGGPPVFRLTGIGPPAPDNSDYLHDVGCKLAQLAEAIHVEFEYRGFVANSLADLE 420
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                        L+++p  +E++aVn+v++lh+ll++++++e+    vL +vk+++P++++vveqe++hns+ Fl+rf+e+l+yys+lfdsle  +   +++++
  XP_010527787.1 421 ACVLELRPseNESVAVNSVFELHKLLARDGAMEK----VLGVVKQMKPEIFTVVEQESNHNSPAFLDRFSESLHYYSTLFDSLEGVV---NSQDK 508
                     *9999999889***********************....**********************************************997...99999 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++++++lg++i+nvvaceg +r+erhetl++Wr+r+++aGF+pv+l+++a kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL+++SaW+
  XP_010527787.1 509 VMSEVYLGKQICNVVACEGPDRVERHETLAQWRSRFGSAGFSPVHLGSNAFKQASMLLALFNgGEGYRVEENDGCLMLGWHTRPLIATSAWK 600
                     9******************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512577122No hitNo description
PfamPF120414.8E-3038103IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011294.8E-3338115No hitNo description
PROSITE profilePS5098566.535214579IPR005202Transcription factor GRAS
PfamPF035142.3E-135240600IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MKRDLSRSRL PAPSSSSSSS ACPKGKMLKV EDDGAGMDEL LAVLGYKVMS SDMAEVAHKL  60
EQLEQMMTHV QDDGLSLLST ETVHYNPAEL YTWLDSILSE LKPGGLGPLL SSPPEMGTSF  120
LTGAESSTIS SIGFGAPNQH SRAFDEPSSS DYDLKAIPGN AIYPQPSRKQ NQSAFDSSSS  180
SNIDGNTNKR LKRSSTDSVR ASTSTATQIS GCVGTTITTT AAESTRAVVL VDSQENGIRL  240
VHALMACAEA VQKNNLTIAE ALVKQIGALA VSQAGAMRKV ATYFAEALAR RIYRLCPPHN  300
PVDHSLSGTL QMHFYESCPY LKFAHFTANQ AILEAVEGKK RVHIIDFSMN QGLQWPALMQ  360
ALALRPGGPP VFRLTGIGPP APDNSDYLHD VGCKLAQLAE AIHVEFEYRG FVANSLADLE  420
ACVLELRPSE NESVAVNSVF ELHKLLARDG AMEKVLGVVK QMKPEIFTVV EQESNHNSPA  480
FLDRFSESLH YYSTLFDSLE GVVNSQDKVM SEVYLGKQIC NVVACEGPDR VERHETLAQW  540
RSRFGSAGFS PVHLGSNAFK QASMLLALFN GGEGYRVEEN DGCLMLGWHT RPLIATSAWK  600
LAGIPAVSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6323559914378Protein SCARECROW
5b3h_A4e-6323559913377Protein SCARECROW
5b3h_D4e-6323559913377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527787.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527787.10.0PREDICTED: DELLA protein GAI-like
SwissprotQ5BN220.0RGA2_BRACM; DELLA protein RGA2
TrEMBLA0A1J3GEX70.0A0A1J3GEX7_NOCCA; DELLA protein RGA2
STRINGXP_010527787.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein