PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010527802.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 485aa MW: 53299.4 Da PI: 5.9988

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010527802.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	129	151	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg sF++ ++ +H ++ XP_010527802.1 129 FECPICGSSFTSEEDVSVHVENC 151 89*****************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.20.90	5.6E-9	22	56	No hit	No description
CDD	cd09212	5.43E-21	194	278	No hit	No description
SuperFamily	SSF143503	8.11E-17	194	276	IPR018997	PUB domain
SMART	SM00580	8.3E-18	195	262	IPR018997	PUB domain
Pfam	PF09409	1.1E-16	195	269	IPR018997	PUB domain
SuperFamily	SSF54236	7.49E-13	343	456	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	5.6E-9	360	454	No hit	No description
PROSITE profile	PS50033	10.666	372	456	IPR001012	UBX domain
Pfam	PF00789	2.8E-5	373	433	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MDDMKDKLKG FMKKVNLSSS SGKFKGQGRV LGSSTSGPGG PIQSRYNPTQ APNPRPKPTP 60 SPTSSSVVSS NSASAPLPEK TLITDQQKPG SPRYTDPDPD RKPQDGFDPY GSLITSSKRS 120 QNGYSLNTFE CPICGSSFTS EEDVSVHVEN CLISGNGDNC SSVNEGSANE NNANENKSEV 180 QNLVAVYLSS KPPESAVDVV LRLLKNIVKE PEIAKFRKIR LSNPKIKEAI GEVPGGIELL 240 EFVGFELKEE AGEMCAVMEV PDDDRVQLVN KVVGLLEQRK VEVSKKDENS ESSAPVVVAE 300 VPAKPKNIDR QIRVFFSVPE SVAARIELPD SFYSLSAEEV KREAEMRRKK MAESQLLIPK 360 SFKEKQAKAA RKRYKRTIIR VQFPDGVVLQ GVFAPWEPTT ALYEFVSSAL KEPSLQFELL 420 DPVLVRRRVI PHSTPHGQNP RTLEDEELVP AALIKFRPME TDSLLFTGLS NELLEISEPL 480 GSNSA

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MDDMKDKLKG FMKKVNLSSS SGKFKGQGRV LGSSTSGPGG PIQSRYNPTQ APNPRPKPTP  60
SPTSSSVVSS NSASAPLPEK TLITDQQKPG SPRYTDPDPD RKPQDGFDPY GSLITSSKRS  120
QNGYSLNTFE CPICGSSFTS EEDVSVHVEN CLISGNGDNC SSVNEGSANE NNANENKSEV  180
QNLVAVYLSS KPPESAVDVV LRLLKNIVKE PEIAKFRKIR LSNPKIKEAI GEVPGGIELL  240
EFVGFELKEE AGEMCAVMEV PDDDRVQLVN KVVGLLEQRK VEVSKKDENS ESSAPVVVAE  300
VPAKPKNIDR QIRVFFSVPE SVAARIELPD SFYSLSAEEV KREAEMRRKK MAESQLLIPK  360
SFKEKQAKAA RKRYKRTIIR VQFPDGVVLQ GVFAPWEPTT ALYEFVSSAL KEPSLQFELL  420
DPVLVRRRVI PHSTPHGQNP RTLEDEELVP AALIKFRPME TDSLLFTGLS NELLEISEPL  480
GSNSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifw_A	3e-15	327	456	23	146	Tether containing UBX domain for GLUT4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010527802.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010527802.1	0.0	PREDICTED: plant UBX domain-containing protein 2 isoform X3
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	R0FNB3	0.0	R0FNB3_9BRAS; Uncharacterized protein
STRING	XP_010527802.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9835	16	18

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]