PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010527829.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

BBR-BPC

Protein Properties

Length: 277aa MW: 31273.7 Da PI: 10.2069

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010527829.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	304.5	3.7e-93	1	277	1	301
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkll 82 mdddg+ rn+gyyepa ++k lglq m ++ +r++k+ r+ nl ++++++++++rd m++ +++++ +++k++ XP_010527829.1 1 MDDDGF--RNWGYYEPA-NFKFSLGLQFMPTV-DRNTKPqlpgRDPNL-MTGPDGPFHTRDyvvsetpipMNY----AWINQ-------HKDKFF 79 9999..9****.99999*****.9*99999.********999998888888....89999.......789* PP GAGA_bind 83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk 177 ++l+ +++ ++l++t+ s+q l+ ++ ++ + +e++pi + +e a+ kk+k + ++ ++k+kk k+k+ + ++ XP_010527829.1 80 NMLPPNHG---------NMLPETSGSPSMQFLH------PPLDV--GNRVEENPIPDDEEIAQAKKRKPGGDSKGTKKRKKPWKQKDGN---GNE 154 **6665.........89****999933......34442..3445678888888888877777777777777777777777732...223 PP GAGA_bind 178 vkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekL 272 ++ e++++ ++a+k +d+v+ngvs+D+s+lPvPvC+C G+++qCY+WG+GGWqSaCCtt+iSvyPLP+s krrgaRi+grKmSqgafkk+LekL XP_010527829.1 155 SN-ERVKRVRQAKKSAVDVVINGVSMDISGLPVPVCTCSGSPQQCYRWGCGGWQSACCTTNISVYPLPMSMKRRGARISGRKMSQGAFKKVLEKL 248 33.33333445666679************************************************************************** PP GAGA_bind 273 aaeGydlsnpvDLkdhWAkHGtnkfvtir 301 a+G+d+ np+DL++ WA+HGtnkfvtir XP_010527829.1 249 VAQGFDFWNPIDLRSRWARHGTNKFVTIR 277 **************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	5.8E-90	1	277	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	5.8E-144	1	277	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MDDDGFRNWG YYEPANFKFS LGLQFMPTVD RNTKPQLPGR DPNLMTGPDG PFHTRDYVVS 60 ETPIPMNYAW INQHKDKFFN MLPPNHGNML PETSGSPSMQ FLHPPLDVGN RVEENPIPDD 120 EEIAQAKKRK PGGDSKGTKK RKKPWKQKDG NGNESNERVK RVRQAKKSAV DVVINGVSMD 180 ISGLPVPVCT CSGSPQQCYR WGCGGWQSAC CTTNISVYPL PMSMKRRGAR ISGRKMSQGA 240 FKKVLEKLVA QGFDFWNPID LRSRWARHGT NKFVTIR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	142	KRKPGGDSKGTKKRKK
2	138	142	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010527829.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010527830.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE2
Swissprot	Q9LDE2	1e-126	BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBL	A0A1J3CP14	1e-128	A0A1J3CP14_NOCCA; Protein BASIC PENTACYSTEINE2
STRING	XP_010527829.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2893	27	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	1e-129	basic pentacysteine 2

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Simonini S,Kater MM Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance. J. Exp. Bot., 2014. 65(6): p. 1455-65 [PMID:24482368]