PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527846.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 579aa    MW: 62583.9 Da    PI: 9.0969
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527846.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-057698123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C+ C+k F r  nL+ H r H
  XP_010527846.1 76 FICEVCNKGFQREQNLQLHRRGH 98
                    89*******************88 PP
2zf-C2H212.50.00044152174123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  XP_010527846.1 152 WKCDKCSKRYAVQSDWKAHSKTC 174
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.69E-77598No hitNo description
Gene3DG3DSA:3.30.160.606.5E-67598IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121712.8E-57698IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00527698IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.997698IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SMARTSM00355110117147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-5140173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.69E-7147172No hitNo description
SMARTSM00355140152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MAASSSSAAS FFGVRQEDQS PIPLQNPSAV AGLPQPPPPL PEAPPQKKKR NQPRTPNSDA  60
EVIALSPKTL MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKSNK EVKRKVYLCP  120
EPTCVHHDPS RALGDLTGIK KHYYRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTKEYR  180
CDCGTIFSRR DSFITHRAFC DALAQESARH PTSLTSLPSH HFPYGHNNTN SNTTNPSNNN  240
ASNMMLALSQ MGAPQNLDLH HHPNQNVDVL RLGSGGAGGG GVSASRSSDL LPPPPTNASS  300
FFMQDQNPSF HEQDTSSHHH QGFLAAANNK TLTFQHGLMQ FSDVHNSPSH NLFNLSFFSG  360
NNNNVQTSNN SAVSSGNLVI SNPFDSENAA AGGGDGSTST GLFPNSLLST TDRINSTAVP  420
SLFSSSMQHP SSNSHMSATA LLQKAARMGS TSNANNNNNN NASSILRSFG GGVYGENDSN  480
FHDLMNSFSA PMDSPFGSYG GSKGSSVDKQ DMTRDFLGVG QIVRSMSGGG GFQPQTQTQP  540
QSQTQLERDR LGSSDSADDR NSMAGAPTSP QYGVHHGSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33148209364Zinc finger protein JACKDAW
5b3h_F2e-33148209364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527846.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6214950.0AJ621495.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 2 (idz2 gene).
GenBankAY0561740.0AY056174.1 Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds.
GenBankAY0813140.0AY081314.1 Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds.
GenBankBT0012150.0BT001215.1 Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527846.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL30.0IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLM4ECV70.0M4ECV7_BRARP; Uncharacterized protein
STRINGXP_010527846.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43732654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.10.0indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]