PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010527982.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28173.1 Da    PI: 7.9369
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010527982.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.11.8e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdae+a+iifs++gklyey+s
  XP_010527982.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALIIFSNRGKLYEYCS 59
                    79***********************************************96 PP
2K-box84.91.7e-28821748100
           K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++++++ ++ +q++ kL++++e Lq++qRhllGe++++L l +L+qLe q++ slk+iRs+K++++leqi+el++ke++l e+nk Lr klee
  XP_010527982.1  82 NQSAKELQEKYQDFLKLRSRVEALQHSQRHLLGEGVGELGLDDLEQLELQVDMSLKQIRSTKTKFMLEQISELKRKEEMLMETNKGLRIKLEE 174
                     4688899*********************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.221161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-33279IPR002100Transcription factor, MADS-box
CDDcd002653.24E-43274No hitNo description
PRINTSPR004044.7E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-333859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-2485172IPR002487Transcription factor, K-box
PROSITE profilePS5129714.78988178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0048440Biological Processcarpel development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048443Biological Processstamen development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALIIFSN RGKLYEYCSS  60
PDGMANTLER YRQCRYETMD PNQSAKELQE KYQDFLKLRS RVEALQHSQR HLLGEGVGEL  120
GLDDLEQLEL QVDMSLKQIR STKTKFMLEQ ISELKRKEEM LMETNKGLRI KLEESEAAIN  180
QWQWGALEPG TSCPADPPNE REGSFIPSLQ SNGPLQISNY KPEVTNAATT SATTSQNVRV  240
FHGWMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-229317222101Developmental protein SEPALLATA 3
4ox0_B2e-229317222101Developmental protein SEPALLATA 3
4ox0_C2e-229317222101Developmental protein SEPALLATA 3
4ox0_D2e-229317222101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:7632923, PubMed:25183521). Plays an important role in the determination of flower meristem identity. Involved in the specification of sepal identity. Contributes to the development of petals, stamens and carpels (PubMed:15530395). {ECO:0000269|PubMed:15530395, ECO:0000269|PubMed:25183521, ECO:0000269|PubMed:7632923}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00030SELEXTransfer from AT2G03710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010527982.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6231632e-40AB623163.2 Pyrus pyrifolia var. culta PpMADS9-1 mRNA for MADS-box protein, complete cds.
GenBankAJ0016812e-40AJ001681.1 Malus domestica mRNA for MADS box protein MdMADS8.
GenBankKC4152362e-40KC415236.1 Malus domestica cultivar Fuji Beni Shogun MADS9-2 mRNA, complete cds.
GenBankKC4152372e-40KC415237.1 Malus domestica cultivar Fuji Beni Shogun MADS8-2 mRNA, complete cds.
GenBankKC4152382e-40KC415238.1 Malus domestica cultivar Fuji Beni Shogun MADS8-1 mRNA, complete cds.
GenBankKP1640022e-40KP164002.1 Pyrus pyrifolia clone PpSEP1-1 SEP1-like MADS-box protein mRNA, complete cds.
GenBankKP1640162e-40KP164016.1 Pyrus pyrifolia clone PpSEP1-2 SEP1-like MADS-box protein mRNA, complete cds.
GenBankU789472e-40U78947.1 Malus domestica MADS-box protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527982.10.0PREDICTED: agamous-like MADS-box protein AGL3
SwissprotP293831e-111AGL3_ARATH; Agamous-like MADS-box protein AGL3
TrEMBLA0A0D3DAN81e-113A0A0D3DAN8_BRAOL; Uncharacterized protein
STRINGXP_010527982.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71352440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.12e-96MIKC_MADS family protein
Publications ? help Back to Top
  1. Maejima K, et al.
    Degradation of class E MADS-domain transcription factors in Arabidopsis by a phytoplasmal effector, phyllogen.
    Plant Signal Behav, 2015. 10(8): p. e1042635
    [PMID:26179462]