PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528119.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YB
Protein Properties Length: 177aa    MW: 19128.4 Da    PI: 7.507
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528119.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB184.39.8e-5830127198
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflPian+srimk++lP n+ki+kdaket+qecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy+eplk+yl++yre+eg
  XP_010528119.1  30 VREQDRFLPIANISRIMKRALPPNGKIAKDAKETLQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKIYLMRYREMEG 124
                     69********************************************************************************************* PP

           NF-YB  96 ekk 98 
                     ++k
  XP_010528119.1 125 DTK 127
                     975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.4E-5627148IPR009072Histone-fold
SuperFamilySSF471133.61E-4133139IPR009072Histone-fold
PfamPF008084.9E-2836100IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.9E-216482No hitNo description
PROSITE patternPS0068506783IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.9E-2183101No hitNo description
PRINTSPR006157.9E-21102120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAETQGKGAS PGGGGSHESG GGQSPRSANV REQDRFLPIA NISRIMKRAL PPNGKIAKDA  60
KETLQECVSE FISFITSEAS DKCQREKRKT INGDDLLWAM ATLGFEDYIE PLKIYLMRYR  120
EMEGDTKGSA KGGDANGKKD AQQTQSAQLA HQGSFSQGLA YGNSQGQHMM VPMPGTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-4830121192Transcription factor HapC (Eurofung)
4g92_B4e-4830121192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528119.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530831e-116AK353083.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-K14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528119.11e-130PREDICTED: nuclear transcription factor Y subunit B-8-like isoform X1
SwissprotQ8VYK41e-100NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLD7LJN91e-105D7LJN9_ARALL; Uncharacterized protein
STRINGXP_010528119.11e-130(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.16e-93nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]