PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528264.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 235aa    MW: 27469.6 Da    PI: 5.731
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528264.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.8e-1862115356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++++t+ q++ Lee F++++++  +++ +LAk+lgL+ rqV vWFqNr+a+ k
  XP_010528264.1  62 RKHRLTAGQVNLLEESFQEENKLEPQRKIQLAKRLGLPPRQVAVWFQNRKARSK 115
                     56779***********************************************98 PP
2HD-ZIP_I/II115.14.1e-3761151191
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                     e+k+rl++ qv+lLEesF+ee+kLep+rK +la++Lgl prqvavWFqnr+AR k kq+E++ye Lk++yd+l+e++e + +e+e+L++++
  XP_010528264.1  61 ERKHRLTAGQVNLLEESFQEENKLEPQRKIQLAKRLGLPPRQVAVWFQNRKARSKVKQIEQEYELLKSSYDSLREKHELVLEENENLKSKV 151
                     69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.55257117IPR001356Homeobox domain
SMARTSM003898.7E-1660121IPR001356Homeobox domain
PfamPF000468.7E-1662115IPR001356Homeobox domain
CDDcd000865.13E-1362118No hitNo description
SuperFamilySSF466891.71E-1763128IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-1964124IPR009057Homeodomain-like
PRINTSPR000312.7E-58897IPR000047Helix-turn-helix motif
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
PRINTSPR000312.7E-597113IPR000047Helix-turn-helix motif
PfamPF021836.2E-12117159IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MICSREMQSG SCVNWLSRGN LDLVLQGTNS VMEKDESSRR RFSMISGNLF NQEYYHHRVQ  60
ERKHRLTAGQ VNLLEESFQE ENKLEPQRKI QLAKRLGLPP RQVAVWFQNR KARSKVKQIE  120
QEYELLKSSY DSLREKHELV LEENENLKSK VLTLTEKLQS NGTDPEMATN QNARSFTNEI  180
NLEPNDDNRT SHAALRPTAE DQGNFSDVFM AAEQQPDNEE PFNWWVWSSI SQPLW
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528264.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528264.11e-175PREDICTED: homeobox-leucine zipper protein HAT5-like
SwissprotQ022838e-39HAT5_ARATH; Homeobox-leucine zipper protein HAT5
STRINGXP_010528264.11e-174(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM163821113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-41homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]