PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010528355.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 310aa MW: 34638 Da PI: 6.4067

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010528355.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.2	1.1e-55	23	149	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++kv ++ +++ ++i e+d++kvePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ XP_010528355.1 23 LPPGFRFHPTDEELITQYLRPKVLNTFFSA-TAIGEADLNKVEPWDLPWRAKMGEKEWYFFCLRDRKYPTGLRTNRATEAGYWKATGKDKEIFK- 115 79***********************999.88***********888999************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfykgrapkgekt+W+mheyrle XP_010528355.1 116 GKSLVGMKKTLVFYKGRAPKGEKTNWIMHEYRLE 149 999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-58	21	153	IPR003441	NAC domain
PROSITE profile	PS51005	54.093	23	163	IPR003441	NAC domain
Pfam	PF02365	1.3E-29	24	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MDFTPRTGEI VGGGESEEEH IDLPPGFRFH PTDEELITQY LRPKVLNTFF SATAIGEADL 60 NKVEPWDLPW RAKMGEKEWY FFCLRDRKYP TGLRTNRATE AGYWKATGKD KEIFKGKSLV 120 GMKKTLVFYK GRAPKGEKTN WIMHEYRLEG RYSIGNLSKT TKKRADGKKV HISGLMGFSS 180 SANPFGSTGL PHVTCFADQA TEDDDERPSC ESNDGFTPPL SGPTSAFQRV SSFSSLPQLI 240 PNYGSQLYAD SVLLQDSPIL KMLLHGQVTD NNQIPEFLDP SATELVPRPL ESIVHPGSPG 300 SAEPGCYWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-49	20	148	14	142	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-49	20	148	14	142	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-49	20	148	14	142	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-49	20	148	14	142	NO APICAL MERISTEM PROTEIN
4dul_A	4e-49	20	148	14	142	NAC domain-containing protein 19
4dul_B	4e-49	20	148	14	142	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269\|PubMed:16359384, ECO:0000269\|PubMed:21303842}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010528355.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269\|PubMed:21303842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010528355.1	0.0	PREDICTED: NAC domain-containing protein 92-like isoform X3
Swissprot	Q9LJW3	1e-109	NAC59_ARATH; NAC domain-containing protein 59
TrEMBL	A0A1J3G1X4	1e-115	A0A1J3G1X4_NOCCA; Uncharacterized protein
STRING	XP_010528353.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39610.1	1e-109	NAC domain containing protein 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Manacorda CA, et al. Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes. Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98 [PMID:23945002] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]