PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528431.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 274aa    MW: 30812.9 Da    PI: 6.5221
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528431.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55.1e-133893255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH......HHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL......ekAveYIksLq 55
                    r +h+e E+rRR++iN++f++L +l+P++    ++K +Ka+ L       +++eYI+ Lq
  XP_010528431.1 38 RSKHSETEQRRRSKINERFQTLMDLIPQN----DQKRDKASFLlelfyvSQVIEYIHFLQ 93
                    899*************************9....89******9844444457999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.4E-2134113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-1635118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.5513692IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-113893IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.37E-133897No hitNo description
SMARTSM003532.0E-74298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MKSPDLEEQE DNDVYDNLPC RNGSSSGEVT RRKTSTYRSK HSETEQRRRS KINERFQTLM  60
DLIPQNDQKR DKASFLLELF YVSQVIEYIH FLQEKLQMYE GSHQMWNQGS AKLIPWRNNP  120
RPAEDASDHS QGMKSWTLNQ DPTSELPSYF PAHPTLQFVQ QDSCQVRPSS GSAVCNTSEP  180
SNLKEKNLAS SSTAYSQGVL SSLTEALKSS GVNLSETLIS VQLSVGKRAD PEAAVTASAS  240
AENTNGLADR EVGSQGETRS FYEESKHAQK RIRR
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00534DAPTransfer from AT5G38860Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528431.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528431.10.0PREDICTED: transcription factor BIM3 isoform X2
SwissprotQ9FMB66e-93BIM3_ARATH; Transcription factor BIM3
TrEMBLD7MJT92e-92D7MJT9_ARALL; Uncharacterized protein
STRINGXP_010528430.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38860.13e-95BES1-interacting Myc-like protein 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]