PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010528437.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

GRAS

Protein Properties

Length: 738aa MW: 83456.9 Da PI: 5.9964

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010528437.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	381.8	8.4e-117	363	732	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+av+++d ++a++lL++++++++p gd +qRl ++f+++L+arla+++s++yk l +++ s s++l+a++lf ++P+ k+s+ XP_010528437.1 363 LRSLLIHCAQAVAADDRRNANELLKQIRQHSTPFGDGNQRLGHCFANGLEARLAGTGSQIYKGLMTKSRS---ASDVLKAYHLFLACCPFRKLSN 454 689***********************************************************999998...99**************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 ++ N++I +++ +++r+H+iDf+i +G+QWp+L+q L+ g+p++RiTg++ p++g ++++eetg+rLa +Aee+gvpfe+++ +ak++++ XP_010528437.1 455 FISNKTIKDSMGNSQRLHVIDFGILYGFQWPTLIQRLSL--YGSPKVRITGIEFPQPGfrPAQRVEETGQRLAAYAEEFGVPFEYTA-IAKKWDT 546 **********************************9..8***********9*************************.7** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++leeL+++++E l++n+ ++ ++l+de+v++es rd+vL+l+++++P+++++ + +n++ F++rf eal ++s++fd+le+ +pre+e r+ XP_010528437.1 547 IQLEELKIEKDEFLVINCLYRAENLHDETVKVESSRDAVLNLIRKINPDLFIHGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDESRR 641 ******************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E e++gre+ n++aceg er+er et+++W+ r +++GF +vp++ ++k a + ++ ++ + + ++e+s ++++gWk+r+++++SaW+ XP_010528437.1 642 LLEMEVFGREALNIIACEGWERVERPETYKQWQVRTMRSGFVQVPFDPAIMKMALRKVQLHYHKDFVIDEDSRWVLQGWKGRTVMALSAWK 732 **********************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.355	337	712	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-114	363	732	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence Send to blast
MVNGTGFNGF PGPTNRTRFP DQSVSPLPNQ SFTSVAGHLY DGFSYTVADA AEALPPPDSE 60 LTLEEDSPED CDFSDVVLNY INQMLMEEDM EDKACMLQES LDLEAAERSL YEAIGKKYPP 120 SPEPNLAYAE SNGETQDHEL SGNFAGNLVD GECISRNGWT QSLRSFTLDF RNSQSRSSAL 180 SASQSSYSSP NSIATYGYGL DEPSNTLYPS SDANGERQSV WLFRRGIEEA RKFLPGENEL 240 IVDFRGNSNG EMAVKEEAKD ENGRDRGRKN PNRDEIGLEE ERSSKLPAVF PETIVRSDVA 300 DKILVHVPGQ DSMKEFNALR DSLKKGVEKK KNTCPREERR GRRSNRRRGS GRGQNGKPEV 360 VDLRSLLIHC AQAVAADDRR NANELLKQIR QHSTPFGDGN QRLGHCFANG LEARLAGTGS 420 QIYKGLMTKS RSASDVLKAY HLFLACCPFR KLSNFISNKT IKDSMGNSQR LHVIDFGILY 480 GFQWPTLIQR LSLYGSPKVR ITGIEFPQPG FRPAQRVEET GQRLAAYAEE FGVPFEYTAI 540 AKKWDTIQLE ELKIEKDEFL VINCLYRAEN LHDETVKVES SRDAVLNLIR KINPDLFIHG 600 IVNGAYNAPF FVTRFREALF HFSSIFDMLE TIVPREDESR RLLEMEVFGR EALNIIACEG 660 WERVERPETY KQWQVRTMRS GFVQVPFDPA IMKMALRKVQ LHYHKDFVID EDSRWVLQGW 720 KGRTVMALSA WKPISKAL

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence Send to blast

MVNGTGFNGF PGPTNRTRFP DQSVSPLPNQ SFTSVAGHLY DGFSYTVADA AEALPPPDSE  60
LTLEEDSPED CDFSDVVLNY INQMLMEEDM EDKACMLQES LDLEAAERSL YEAIGKKYPP  120
SPEPNLAYAE SNGETQDHEL SGNFAGNLVD GECISRNGWT QSLRSFTLDF RNSQSRSSAL  180
SASQSSYSSP NSIATYGYGL DEPSNTLYPS SDANGERQSV WLFRRGIEEA RKFLPGENEL  240
IVDFRGNSNG EMAVKEEAKD ENGRDRGRKN PNRDEIGLEE ERSSKLPAVF PETIVRSDVA  300
DKILVHVPGQ DSMKEFNALR DSLKKGVEKK KNTCPREERR GRRSNRRRGS GRGQNGKPEV  360
VDLRSLLIHC AQAVAADDRR NANELLKQIR QHSTPFGDGN QRLGHCFANG LEARLAGTGS  420
QIYKGLMTKS RSASDVLKAY HLFLACCPFR KLSNFISNKT IKDSMGNSQR LHVIDFGILY  480
GFQWPTLIQR LSLYGSPKVR ITGIEFPQPG FRPAQRVEET GQRLAAYAEE FGVPFEYTAI  540
AKKWDTIQLE ELKIEKDEFL VINCLYRAEN LHDETVKVES SRDAVLNLIR KINPDLFIHG  600
IVNGAYNAPF FVTRFREALF HFSSIFDMLE TIVPREDESR RLLEMEVFGR EALNIIACEG  660
WERVERPETY KQWQVRTMRS GFVQVPFDPA IMKMALRKVQ LHYHKDFVID EDSRWVLQGW  720
KGRTVMALSA WKPISKAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-45	369	735	25	382	Protein SCARECROW
5b3h_A	7e-45	369	735	24	381	Protein SCARECROW
5b3h_D	7e-45	369	735	24	381	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010528437.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010528437.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	V4MIK6	0.0	V4MIK6_EUTSA; Uncharacterized protein
STRING	XP_010528437.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein