PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528503.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YC
Protein Properties Length: 211aa    MW: 24015.6 Da    PI: 5.223
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC133.37.4e-4242142298
           NF-YC   2 lksfwekqiekatdfk....nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     lk fw++q++++++f      + lPlar+kki+k+d+dvkmisa++  +++kace+file+tlr+w+h+e+++rrt++++dia+a+  +di+dfl
  XP_010528503.1  42 LKLFWHQQLDEMNNFTgfkgPNPLPLARVKKIMKSDPDVKMISADTAPVFAKACEIFILEMTLRAWIHTESCNRRTIQRADIAEALRGSDIYDFL 136
                     89******666665542215678************************************************************************ PP

           NF-YC  93 vdivpr 98 
                     +d+ p 
  XP_010528503.1 137 IDVFPF 142
                     **9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.01E-2536136IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.7E-3065141IPR009072Histone-fold
PfamPF008081.7E-1865127IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MWFQHPLHGI YTTMPMPDPV FPYYSATGEI DEELTQRMVQ NLKLFWHQQL DEMNNFTGFK  60
GPNPLPLARV KKIMKSDPDV KMISADTAPV FAKACEIFIL EMTLRAWIHT ESCNRRTIQR  120
ADIAEALRGS DIYDFLIDVF PFRPHCIHHM GTYPNAVQVG PSAVHQPVFA LPDINVSANL  180
NQTEQNPEVP PEVMADSFVA HEPLDLNFAL P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-3249141394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528503.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528503.21e-159PREDICTED: nuclear transcription factor Y subunit C-10
STRINGXP_010528503.11e-158(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM164221112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38140.11e-48nuclear factor Y, subunit C12