PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528540.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 546aa    MW: 59920.6 Da    PI: 5.2726
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528540.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.61.4e-1281825421374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     lv++L++cAeav+++dl+la+al++++  la++++  +m+++a+yf+e+La+r++r        + p+++ +   s++l++   f+e +P+lkf+
  XP_010528540.1 182 LVHALMACAEAVQQNDLKLADALVKHVGLLAASQAvGAMRKVATYFAEGLARRIYR--------IYPRDEGSLFFSDTLHF--HFYESCPYLKFA 266
                     689***************************777776********************........44555553335555555..3*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                     h+taNqaIle ++++ervH+iD++++ GlQWpaL+qaLa Rp+g+p +R+Tg+g+ + +  +++ l+e+g++L+++A++lgv+fef+ + ++ l+
  XP_010528540.1 267 HFTANQAILERFATAERVHVIDLSLTLGLQWPALIQALALRPGGSPAFRLTGIGQVSDSpeNADPLREIGWKLSHLARTLGVEFEFKSISVNCLS 361
                     *******************************************************87778899******************************** PP

            GRAS 188 dleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     +le+e+++++p  E++aVn+v++lhrll++++s+e+    v +++ks++P++++vveqea+hn++ Fl+rf+e+l+y s+lfdsle      s++
  XP_010528540.1 362 ELEPEMFETRPgSESVAVNSVFELHRLLARTGSIEK----VFSTIKSIKPDIITVVEQEANHNGAVFLDRFTESLHYSSSLFDSLEGP---PSQD 449
                     ***********99***********************....*********************************************999...5666 PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ri+ E  +lgr+i n+vaceg +r+erhetl++Wr r+++aGF+pv+l+++a+kqa++ll+ ++  dgyrvee++g+l+lgW+ rpL+ +SaWr
  XP_010528540.1 450 RIMSEL-FLGRQILNLVACEGPDRVERHETLSQWRIRFGSAGFEPVHLGSNAYKQASMLLALFAgADGYRVEENDGCLLLGWQMRPLIGTSAWR 542
                     666555.5*************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576116No hitNo description
PfamPF120417.5E-3350117IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011294.0E-3450123No hitNo description
PROSITE profilePS5098563.688156521IPR005202Transcription factor GRAS
PfamPF035144.7E-126182542IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MKREHNHGNT SSGGGCSGGA AVEGASSSSS MASNKGKILR LEEKETTGVD ELLVVLGYKV  60
LSSDMADVAE KLEELEMVLG SVQDDGISHL SNDTVHYNPS DLSGWVDTML ADLDATRNHC  120
RVFEDHSEYD LRAIPGSAAF PRPDPEEDVN RRKRVKTGSG PDLTESTRSV VLLDSQETGV  180
RLVHALMACA EAVQQNDLKL ADALVKHVGL LAASQAVGAM RKVATYFAEG LARRIYRIYP  240
RDEGSLFFSD TLHFHFYESC PYLKFAHFTA NQAILERFAT AERVHVIDLS LTLGLQWPAL  300
IQALALRPGG SPAFRLTGIG QVSDSPENAD PLREIGWKLS HLARTLGVEF EFKSISVNCL  360
SELEPEMFET RPGSESVAVN SVFELHRLLA RTGSIEKVFS TIKSIKPDII TVVEQEANHN  420
GAVFLDRFTE SLHYSSSLFD SLEGPPSQDR IMSELFLGRQ ILNLVACEGP DRVERHETLS  480
QWRIRFGSAG FEPVHLGSNA YKQASMLLAL FAGADGYRVE ENDGCLLLGW QMRPLIGTSA  540
WRLAAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5817754114378Protein SCARECROW
5b3h_A1e-5817754113377Protein SCARECROW
5b3h_D1e-5817754113377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Has overlapping but distinct roles in GA signaling compared to RGA and GAI. Regulates the floral development. May also participate in seed germination and in ovule and anther development. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269|PubMed:11826301, ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528540.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated upon GA treatment.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528540.10.0PREDICTED: DELLA protein RGL1
SwissprotQ9C8Y30.0RGL1_ARATH; DELLA protein RGL1
TrEMBLA0A087HFZ90.0A0A087HFZ9_ARAAL; Uncharacterized protein
STRINGXP_010528540.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.10.0RGA-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yan A, et al.
    AtEXP2 is involved in seed germination and abiotic stress response in Arabidopsis.
    PLoS ONE, 2014. 9(1): p. e85208
    [PMID:24404203]
  3. Gallego-Giraldo C, et al.
    Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis.
    Plant J., 2014. 79(6): p. 1020-1032
    [PMID:24961590]
  4. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  5. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  6. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  7. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]
  8. Chen L,Xiang S,Chen Y,Li D,Yu D
    Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence.
    Mol Plant, 2017. 10(9): p. 1174-1189
    [PMID:28735023]
  9. Zhang L,Chen L,Yu D
    Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering.
    Plant Physiol., 2018. 176(1): p. 790-803
    [PMID:29133369]