PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010528598.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 626aa MW: 70941.1 Da PI: 5.4335

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010528598.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.4	9.6e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v XP_010528598.1 6 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVS 99 79**************************.99***********6434555777********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++ vg+kktLv+y grap+g++tdWvmheyrl XP_010528598.1 100 S-QSRSVGTKKTLVYYGGRAPHGSRTDWVMHEYRL 133 9.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.02E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.385	6	156	IPR003441	NAC domain
Pfam	PF02365	9.7E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence Send to blast
MAPVALPPGF RFHPTDEELV AYYLKRKING RKIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVSS QSRSVGTKKT LVYYGGRAPH 120 GSRTDWVMHE YRLDEHECES KSGLQDAYAL CRVFKKNAVS PKVEEQCVDG MKSSITNAMN 180 MNSEQSSSTG MYSEGKYEDL ESSGYPISPD VYGTQFRNIP SSDIETREEK WSQFLSQDSF 240 NLPAPSQFCS QYGPTNSYPP FKVDIAFECE RLQNRLSLPP LHMEDLPHAG FLETDLLNNT 300 DDVLNKILSI AQASQEQASN QVSWNAACGS QNIHGDNFDF AGERFANFNN RNGENSWEEA 360 NLNAVGAQGP AERFKEERMI ENLRWVGVSS KELEKSFIEE HTRIVPVESI WSYRRDDQEH 420 ESQDGAGFKN SDGDLDDVVT LEFSDDEHNG NLAEQENGNI TDVEVVKRVK FSRGMFVTTR 480 QVTNTFFQQI VPSQTVIVYI NPATTVGEKQ APDEAGDHAI PKIEPFEERK FSGSIFEPWR 540 KVAHVIGFIP MLLLMHCVQR GSNSNNIERI QGRKEHHRIH DNDNQDQSLV GNGSRVHHQE 600 SFVLVVLKKL GVSLAIVFAL STLCLI

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence Send to blast

MAPVALPPGF RFHPTDEELV AYYLKRKING RKIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVSS QSRSVGTKKT LVYYGGRAPH  120
GSRTDWVMHE YRLDEHECES KSGLQDAYAL CRVFKKNAVS PKVEEQCVDG MKSSITNAMN  180
MNSEQSSSTG MYSEGKYEDL ESSGYPISPD VYGTQFRNIP SSDIETREEK WSQFLSQDSF  240
NLPAPSQFCS QYGPTNSYPP FKVDIAFECE RLQNRLSLPP LHMEDLPHAG FLETDLLNNT  300
DDVLNKILSI AQASQEQASN QVSWNAACGS QNIHGDNFDF AGERFANFNN RNGENSWEEA  360
NLNAVGAQGP AERFKEERMI ENLRWVGVSS KELEKSFIEE HTRIVPVESI WSYRRDDQEH  420
ESQDGAGFKN SDGDLDDVVT LEFSDDEHNG NLAEQENGNI TDVEVVKRVK FSRGMFVTTR  480
QVTNTFFQQI VPSQTVIVYI NPATTVGEKQ APDEAGDHAI PKIEPFEERK FSGSIFEPWR  540
KVAHVIGFIP MLLLMHCVQR GSNSNNIERI QGRKEHHRIH DNDNQDQSLV GNGSRVHHQE  600
SFVLVVLKKL GVSLAIVFAL STLCLI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-56	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-56	1	162	15	174	NAC domain-containing protein 19
3swm_B	1e-56	1	162	15	174	NAC domain-containing protein 19
3swm_C	1e-56	1	162	15	174	NAC domain-containing protein 19
3swm_D	1e-56	1	162	15	174	NAC domain-containing protein 19
3swp_A	1e-56	1	162	15	174	NAC domain-containing protein 19
3swp_B	1e-56	1	162	15	174	NAC domain-containing protein 19
3swp_C	1e-56	1	162	15	174	NAC domain-containing protein 19
3swp_D	1e-56	1	162	15	174	NAC domain-containing protein 19
4dul_A	1e-56	1	162	12	171	NAC domain-containing protein 19
4dul_B	1e-56	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010528598.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010528598.1	0.0	PREDICTED: NAC domain-containing protein 86 isoform X1
TrEMBL	V4KFM3	0.0	V4KFM3_EUTSA; Uncharacterized protein
STRING	XP_010528598.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10112	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	0.0	NAC domain containing protein 28