PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010528768.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 397aa MW: 43431.1 Da PI: 8.565

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010528768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.5	7.5e-34	42	96	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerFveav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl XP_010528768.1 42 KPRLKWTPDLHERFVEAVHQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 96 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.172	39	99	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-32	40	97	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.88E-17	41	97	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.8E-23	42	97	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-10	44	95	IPR001005	SANT/Myb domain
Pfam	PF14379	1.0E-22	144	188	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MYQGKNMNSS SRMPVTAPER HLFLHPGNGP GDPGLVLSTD AKPRLKWTPD LHERFVEAVH 60 QLGGADKATP KTVMKLMGIP GLTLYHLKSH LQKYRLSKNI HGQANNGVHR ISVVAMSGDK 120 RPESAGTNMA NLNIGTQMNK NSPIGEAIQM QIEVQRRLHE QLEVQRHLQM QMEAQGKYLQ 180 AVLEKAQEML GRQNLGSVGL EAAKIQLSEL VSKVSNECLR SRLSGMKELH GFCPQQRIRQ 240 AARPADCSLE SCLTTCEASQ MEEQLGLSTY SGSSLIFKSK DIVEEPLLRQ TELNWSGELK 300 ENRRLTGKES GRRTFSGGRS SVNDLSIGVG PTNDADYAYG ATENEASGSA GRVSGERGSN 360 EYNLSYFATK LDLNTGGETD SAMKGCKQLD LNGFGGS

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MYQGKNMNSS SRMPVTAPER HLFLHPGNGP GDPGLVLSTD AKPRLKWTPD LHERFVEAVH  60
QLGGADKATP KTVMKLMGIP GLTLYHLKSH LQKYRLSKNI HGQANNGVHR ISVVAMSGDK  120
RPESAGTNMA NLNIGTQMNK NSPIGEAIQM QIEVQRRLHE QLEVQRHLQM QMEAQGKYLQ  180
AVLEKAQEML GRQNLGSVGL EAAKIQLSEL VSKVSNECLR SRLSGMKELH GFCPQQRIRQ  240
AARPADCSLE SCLTTCEASQ MEEQLGLSTY SGSSLIFKSK DIVEEPLLRQ TELNWSGELK  300
ENRRLTGKES GRRTFSGGRS SVNDLSIGVG PTNDADYAYG ATENEASGSA GRVSGERGSN  360
EYNLSYFATK LDLNTGGETD SAMKGCKQLD LNGFGGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-21	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-21	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-21	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-21	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-21	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-21	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-21	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-21	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010528768.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010528768.1	0.0	PREDICTED: myb-related protein 2-like
Swissprot	Q9SQQ9	1e-138	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A061F2V1	1e-165	A0A061F2V1_THECC; Homeodomain-like superfamily protein isoform 1
TrEMBL	A0A061F9P8	1e-165	A0A061F9P8_THECC; Homeodomain-like superfamily protein isoform 2
STRING	XP_010528768.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3336	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-138	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]