PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528862.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 337aa    MW: 37772.1 Da    PI: 5.617
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528862.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.5e-13137188155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A++++++L+
  XP_010528862.1 137 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIVGGAINFVRELE 188
                     79****************************...9*****************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-15135200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13135192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-12135192No hitNo description
PROSITE profilePS5088815.332136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10137188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9142193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MALEAVVFQQ DHIFGYNGKD LSSAFVEEEP RLYDLQGSLS FLGNQTENFD CTFPQDDYCW  60
SVPQDSTGLL VTDFKIPNSY SSNSSDYPNC YNSSCNEQQQ QPQQQQQGDN DANSSGLNRA  120
KRRRSKTRKN KEEIENQRMT HIAVERNRRK QMNEYLSVLR SLMPESYVQR GDQASIVGGA  180
INFVRELEHR LHRLSVHGDS KEKPISGGGS SSSSADPFSD FFKFPQFSTG SCSGETGENN  240
AVLEANALAD IEVSLIESHA SLKIRTKRRP KLLLNVVSGL QTLGFIILHL NVSTADDFVL  300
YCFSTKVEDD CKLTSVADIA TAVYQMLCLI HQHEVVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137148RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528862.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528862.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T43e-72BH096_ARATH; Transcription factor bHLH96
TrEMBLR0GEN31e-118R0GEN3_9BRAS; Uncharacterized protein
STRINGXP_010528862.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142991821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]