PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010528978.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 244aa    MW: 27365.8 Da    PI: 4.5837
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010528978.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17251255
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    +y GVr+++ +gr++AeIr  +     +  r++lg+f+taeeAa a++ a++++ g
  XP_010528978.1  2 KYLGVRRRP-WGRYAAEIRNpF-----TkERHWLGTFDTAEEAALAYDGAARSMIG 51
                    799******.**********66.....34**********************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.915259IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-26258IPR001471AP2/ERF domain
CDDcd000181.82E-27258No hitNo description
PfamPF008474.5E-11251IPR001471AP2/ERF domain
SMARTSM003802.8E-28265IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-19259IPR016177DNA-binding domain
PRINTSPR003678.8E-9314IPR001471AP2/ERF domain
PRINTSPR003678.8E-92541IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
GKYLGVRRRP WGRYAAEIRN PFTKERHWLG TFDTAEEAAL AYDGAARSMI GVLAPTNFVY  60
PDISMNRQPQ QSQPSSGNNS VEHNVCWGSS MSCLGKDQQL QPPDNNWVDP NLSGESSRYY  120
FLQEQPQDNN GVDPNVHWVS PSSWFLQENQ PVSLINNVSH CYDNSSNGRP LLLSGYQDMG  180
EQGSTDQMKI GPTPSDEAPR FEFDHTKSYL QNHLFSDMPS TCSDDTDKDG VPQRQDVGSS  240
SSFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-181581371Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010528978.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010528978.20.0PREDICTED: ethylene-responsive transcription factor ERF088, partial
STRINGXP_010528978.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.19e-39ERF family protein