PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010529022.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 238aa MW: 27300 Da PI: 8.891

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010529022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	84.6	1.9e-26	10	141	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya.tgkrknratk....sgyWkatgkd 89 +G++F+P+d++l+ +L+ kv+g ++ ik+vd+y +ePw Lp+ + + +++ewy+F+k+ ++ + kr++r+++ g+Wk+t + XP_010529022.1 10 VGLKFRPNDKDLI-SHLRWKVNGGGDSF---IKDVDVYGSEPWLLPHVT-EplfQDNEWYYFVKKTIDSTrKRKRQSRQVQkkenGGTWKSTTGE 99 79*********.89*****655...***********533.2355999*999766552456677753334459***** PP NAM 90 kevlsk.kgelvglkktLvfykg..rapkgektdWvmheyrl 128 +e+ + + ++g + L+f ++ + k ktdW+m eyrl XP_010529022.1 100 EEIRDGgNAVVIGHARNLTFMENevGSTKQMKTDWLMREYRL 141 97555669*****6522566778*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	35.368	8	157	IPR003441	NAC domain
SuperFamily	SSF101941	9.02E-33	9	157	IPR003441	NAC domain
Pfam	PF02365	1.6E-15	10	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MAMDDWQDIV GLKFRPNDKD LISHLRWKVN GGGDSFIKDV DVYGSEPWLL PHVTEPLFQD 60 NEWYYFVKKT IDSTRKRKRQ SRQVQKKENG GTWKSTTGEE EIRDGGNAVV IGHARNLTFM 120 ENEVGSTKQM KTDWLMREYR LPSQESQEWV VCRIRRKSNG RVNGDGRRMN QDVGKLVMSR 180 DMSGCYIAAG KMVMKEMTID FDVFCAFVEH VVGRNLQCGL AITVDSHGSN VINAKSVQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-14	11	159	20	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-14	11	159	20	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-14	11	159	20	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-14	11	159	20	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-14	11	159	23	170	NAC domain-containing protein 19
3swm_B	2e-14	11	159	23	170	NAC domain-containing protein 19
3swm_C	2e-14	11	159	23	170	NAC domain-containing protein 19
3swm_D	2e-14	11	159	23	170	NAC domain-containing protein 19
3swp_A	2e-14	11	159	23	170	NAC domain-containing protein 19
3swp_B	2e-14	11	159	23	170	NAC domain-containing protein 19
3swp_C	2e-14	11	159	23	170	NAC domain-containing protein 19
3swp_D	2e-14	11	159	23	170	NAC domain-containing protein 19
4dul_A	2e-14	11	159	20	167	NAC domain-containing protein 19
4dul_B	2e-14	11	159	20	167	NAC domain-containing protein 19

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010529022.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010529022.1	1e-179	PREDICTED: NAC domain-containing protein 6-like
STRING	XP_010529022.1	1e-178	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2607	13	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03490.1	9e-19	NAC domain containing protein 6