PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529024.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NF-YB
Protein Properties Length: 136aa    MW: 15506.1 Da    PI: 4.6642
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529024.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB161.11.6e-50297297
           NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                    +++dr+lPianv+r+mk+ lPanakisk+ak t+qec++efisfvt+easdkc++e+rkt+ngdd++wal+tlG+++y++++  yl++yre+e+e+
  XP_010529024.1  2 TDEDRLLPIANVGRLMKQLLPANAKISKEAKLTMQECATEFISFVTCEASDKCHKENRKTVNGDDICWALSTLGLDNYADAMGRYLHNYREAERER 97
                    689******************************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.1E-492127IPR009072Histone-fold
SuperFamilySSF471132.74E-384121IPR009072Histone-fold
PfamPF008085.7E-25771IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.2E-153553No hitNo description
PROSITE patternPS0068503854IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.2E-155472No hitNo description
PRINTSPR006152.2E-157391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MTDEDRLLPI ANVGRLMKQL LPANAKISKE AKLTMQECAT EFISFVTCEA SDKCHKENRK  60
TVNGDDICWA LSTLGLDNYA DAMGRYLHNY REAERERAEQ SRVNEDIRRD EEEEPNSRSE  120
LQNQQIEGSS SHTQAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-39192192Transcription factor HapC (Eurofung)
4g92_B3e-39192192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529024.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529024.12e-98PREDICTED: nuclear transcription factor Y subunit B-4-like
SwissprotO040274e-68NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLR0IG986e-68R0IG98_9BRAS; Uncharacterized protein
STRINGXP_010529024.17e-98(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.12e-63nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]