PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529151.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family M-type_MADS
Protein Properties Length: 204aa    MW: 22955.4 Da    PI: 10.4799
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529151.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.29.2e-231157349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    ++++s rqvtfskRrng++KKA ELS+LC+++vav++fs+ g+ y y
  XP_010529151.1 11 VKDSSTRQVTFSKRRNGVFKKADELSTLCGVDVAVMVFSPGGRPYSY 57
                    7899**************************************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.791161IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.16E-28280IPR002100Transcription factor, MADS-box
CDDcd002657.54E-31270No hitNo description
PRINTSPR004041.7E-18323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-241157IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-182338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-183859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGRRKIPMEM VKDSSTRQVT FSKRRNGVFK KADELSTLCG VDVAVMVFSP GGRPYSYGNP  60
SVHAVVDRYL GPVDRSSETH NRSVCKNANA TSRRAKRTTA AKARVENSLA CLHSFEEELE  120
VEKLRGEALE KNLKKTCENN NIKDVKDLNM DELKETKKKL EALREMINGR AVEMEASSTL  180
MMLSRCKTPT KSEGSKKGNK KRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529151.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529151.11e-148PREDICTED: agamous-like MADS-box protein AGL29
STRINGXP_010529151.11e-148(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-31AGAMOUS-like 29