PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529235.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 257aa    MW: 29775.8 Da    PI: 6.5827
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.42.9e-23121181259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dD ++WrKYGqK++  s++pr+YYrCt++   +C+++k+v++ ++dp v  +tY g+H+++
  XP_010529235.1 121 DDDHSWRKYGQKNILRSKHPRNYYRCTHKyeqKCQATKQVQQMRDDPPVYRTTYYGNHTCR 181
                     8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-24111181IPR003657WRKY domain
PROSITE profilePS5081118.636115178IPR003657WRKY domain
SuperFamilySSF1182901.23E-23118181IPR003657WRKY domain
SMARTSM007741.2E-32120182IPR003657WRKY domain
PfamPF031061.0E-23121181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSSSSENLGL EREKAMEELI RGRDCADRLR TAMENPSKTD KEDLLKKIVA SFTNTLSILR  60
RFDHFEEVSQ IPVGSSAPDS RKSDDSGESI RSSLPRNRRG CYKRRKHAHS WSREDSPSPF  120
DDDHSWRKYG QKNILRSKHP RNYYRCTHKY EQKCQATKQV QQMRDDPPVY RTTYYGNHTC  180
RDLHVAPHLF LHSPDRHDNP SLFLSFDQGN DGFTLPVKQE SDDLPPPLDE SDPTVLDSCT  240
ASFGFDDFMD DFSFDFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-22120181869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529235.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529235.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A061EIE67e-71A0A061EIE6_THECC; WRKY DNA-binding protein 70, putative isoform 1
STRINGXP_010529235.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167191012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.14e-42WRKY DNA-binding protein 70