PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010529238.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

G2-like

Protein Properties

Length: 261aa MW: 29163.6 Da PI: 8.4359

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010529238.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.7	2.2e-32	24	78	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av++LGG++kAtPk++l+lm++kgLtl h+kSHLQkYRl XP_010529238.1 24 KPRLRWTAELHDRFVDAVTKLGGADKATPKSVLKLMGLKGLTLFHLKSHLQKYRL 78 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.163	21	81	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-31	21	82	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.42E-17	24	81	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.6E-24	24	79	IPR006447	Myb domain, plants
Pfam	PF00249	6.4E-9	26	77	IPR001005	SANT/Myb domain
Pfam	PF14379	6.8E-14	128	170	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MEMMKLGGSI GYENGGVVMT RDPKPRLRWT AELHDRFVDA VTKLGGADKA TPKSVLKLMG 60 LKGLTLFHLK SHLQKYRLGQ QQAKKLNHAD DNKENAGSSY VHFNTHSQGD FSNLPRIDNQ 120 QRNIPFGESS RHQVEGQQKL RQQLEVQKKL QMRIEAQGKY LLALLDKAKT SFPTLANLPS 180 DAEATTGQFS DFNLTLEGSN DGEEKSQKVA SSTADTSNNS ESEDFGVCRE RENENSKSGY 240 DLMTLGNYGM EIKPNVFADR H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-19	24	77	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	24	77	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	24	77	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	24	77	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010529238.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010529238.1	0.0	PREDICTED: myb family transcription factor PHL11-like isoform X1
Swissprot	C0SVS4	1e-111	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A087GNV0	1e-111	A0A087GNV0_ARAAL; Uncharacterized protein
STRING	XP_010529238.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12495	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-105	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]