PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010529274.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

BES1

Protein Properties

Length: 673aa MW: 75321.3 Da PI: 6.3141

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010529274.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	158.5	4.4e-49	70	209	1	136
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 g++g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw+ve DGttyr++ p+ ++ +++++ +s+es+l+ XP_010529274.1 70 GAKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWTVETDGTTYRQS--PP--TNPVVHFQARSVESPLS 160 5899****************************************************************55..33..35666677777777776 PP DUF822 96 .sslkssalaspvesysaspksssfpspssldsislasa.......asl 136 ++lks+++++ ++ ++++++ ++ +sp+slds+ +a++ +s XP_010529274.1 161 sNTLKSCSVKAALDCQQSVLRIDENLSPVSLDSVVIAESdagneryTSA 209 678*******************************9886665444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	1.4E-48	72	215	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	7.62E-161	236	671	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	3.1E-172	239	670	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	2.2E-85	247	633	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.8E-57	276	290	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.8E-57	297	315	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.8E-57	319	340	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.8E-57	412	434	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.8E-57	485	504	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.8E-57	519	535	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.8E-57	536	547	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.8E-57	554	577	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.8E-57	592	614	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence Send to blast
MHTLNNTTTD SQDPNFDPDQ VSYRTQQQQP LSQPRRPRGF AAAAAAGGAA GSDNGDSGSI 60 RGGGGSGGGG AKGKREREKE KERTKLRERH RRAITSRMLA GLRQYGNFPL PARADMNDVI 120 AALAREAGWT VETDGTTYRQ SPPTNPVVHF QARSVESPLS SNTLKSCSVK AALDCQQSVL 180 RIDENLSPVS LDSVVIAESD AGNERYTSAS PINSVGGLEA DQLIQDVRSA QHQNAFTGNC 240 YVPVYTMLPA GIINNFCQLV DPEAVRQELS YMKSLNVDGV VIECWWGIVE GWNPKKYVWS 300 GYRELFNIVR DFKLKLQVVM AFHEYGGNPS SNAIISLPQW VLEIAKDNPD IFFTDREGRR 360 NTECLNWSID KERVLHGRTG IEVYFDVMRS FRTEFDDLFA EGLISAVEIG LGASGELKYP 420 SFSERMGWSY PGIGEFQCYD KYSQKNLQKA AKSREYSFWA KGPENAGHYN SRPHETGFFC 480 DRGDYDSYYG RFFLNWYSQL LIEHAENVLS LASLAFDETK IIVKVPAIYW WYKTASHAAE 540 LTAGYYNPTN RDGYSPVFEA LKKHSVTVKF VCSGLQMLTT EHDKALADPE GLSWQVLNAA 600 WDGGMSIAGE NAVSCFDREG CMRIVEMAKP RNHPENRHFS FFVYHQPSPL VQGSTCFADL 660 DYFIKCMHGD IQR

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence Send to blast

MHTLNNTTTD SQDPNFDPDQ VSYRTQQQQP LSQPRRPRGF AAAAAAGGAA GSDNGDSGSI  60
RGGGGSGGGG AKGKREREKE KERTKLRERH RRAITSRMLA GLRQYGNFPL PARADMNDVI  120
AALAREAGWT VETDGTTYRQ SPPTNPVVHF QARSVESPLS SNTLKSCSVK AALDCQQSVL  180
RIDENLSPVS LDSVVIAESD AGNERYTSAS PINSVGGLEA DQLIQDVRSA QHQNAFTGNC  240
YVPVYTMLPA GIINNFCQLV DPEAVRQELS YMKSLNVDGV VIECWWGIVE GWNPKKYVWS  300
GYRELFNIVR DFKLKLQVVM AFHEYGGNPS SNAIISLPQW VLEIAKDNPD IFFTDREGRR  360
NTECLNWSID KERVLHGRTG IEVYFDVMRS FRTEFDDLFA EGLISAVEIG LGASGELKYP  420
SFSERMGWSY PGIGEFQCYD KYSQKNLQKA AKSREYSFWA KGPENAGHYN SRPHETGFFC  480
DRGDYDSYYG RFFLNWYSQL LIEHAENVLS LASLAFDETK IIVKVPAIYW WYKTASHAAE  540
LTAGYYNPTN RDGYSPVFEA LKKHSVTVKF VCSGLQMLTT EHDKALADPE GLSWQVLNAA  600
WDGGMSIAGE NAVSCFDREG CMRIVEMAKP RNHPENRHFS FFVYHQPSPL VQGSTCFADL  660
DYFIKCMHGD IQR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-119	241	670	11	444	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010529274.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010529274.2	0.0	PREDICTED: LOW QUALITY PROTEIN: beta-amylase 8
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	D7MUR1	0.0	D7MUR1_ARALL; Beta-amylase
STRING	XP_010529274.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10888	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]