PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529519.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 24611.2 Da    PI: 9.3538
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529519.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.98.6e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  XP_010529519.1  9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
                    79***********************************************96 PP
2K-box77.92.6e-2682172999
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + + +++  + e   L ++ie+L+ ++R++lGe+Le +s++eLqqLe+qLe++l+kiR+kK++l++e+ie+l++ e++l eenk+L+++ e
  XP_010529519.1  82 KGNVNSQPAKDETYGLARKIEQLEISKRKMLGEGLEACSIEELQQLENQLERGLTKIRAKKYQLFREEIEKLKEEERNLLEENKKLKEECE 172
                     45667888999999************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.071161IPR002100Transcription factor, MADS-box
CDDcd002651.79E-42378No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-31323IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-33374IPR002100Transcription factor, MADS-box
PfamPF003195.1E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-313859IPR002100Transcription factor, MADS-box
PfamPF014866.8E-2686171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.92487177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010048Biological Processvernalization response
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSS  60
SITKTIDRYQ KRTKDLAITN SKGNVNSQPA KDETYGLARK IEQLEISKRK MLGEGLEACS  120
IEELQQLENQ LERGLTKIRA KKYQLFREEI EKLKEEERNL LEENKKLKEE CETGARGALL  180
QAKQVEEVKI DDMEVETDLF IGPPETRPAK KNAGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-18169169MEF2C
5f28_B5e-18169169MEF2C
5f28_C5e-18169169MEF2C
5f28_D5e-18169169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529519.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529519.11e-153PREDICTED: agamous-like MADS-box protein AGL14
RefseqXP_010529520.11e-153PREDICTED: agamous-like MADS-box protein AGL14
RefseqXP_010529521.11e-153PREDICTED: agamous-like MADS-box protein AGL14
SwissprotO827431e-103AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLR0F2Q81e-103R0F2Q8_9BRAS; Uncharacterized protein
STRINGXP_010529519.11e-153(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.15e-79AGAMOUS-like 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]