PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010529766.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 440aa    MW: 49143.8 Da    PI: 9.7815
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010529766.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.71e-32174230360
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     DgynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkvers  d+++ ei+Y+geHnh+k
  XP_010529766.1 174 DGYNWRKYGQKQVKGSECPRSYYKCTHLNCPVKKKVERSL-DGQISEIVYQGEHNHPK 230
                     9***************************************.***************85 PP
2WRKY105.52.9e-33369426259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+v g++fprsYYrCts++C+++k+ver+++dp+++++tYeg+Hnh+
  XP_010529766.1 369 EDGFRWRKYGQKVVGGNPFPRSYYRCTSTNCRARKHVERASDDPRAFITTYEGKHNHQ 426
                     8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-28169231IPR003657WRKY domain
SMARTSM007743.4E-35172230IPR003657WRKY domain
SuperFamilySSF1182901.83E-24173231IPR003657WRKY domain
PfamPF031067.4E-26174229IPR003657WRKY domain
PROSITE profilePS5081123.445174231IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.5E-33356428IPR003657WRKY domain
PROSITE profilePS5081134.039363428IPR003657WRKY domain
SuperFamilySSF1182903.4E-28364428IPR003657WRKY domain
SMARTSM007747.3E-40368427IPR003657WRKY domain
PfamPF031069.3E-27369426IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEMKEAERVV IARPIASRPS CSGFRTFTEL LTKSVNVSPQ KICPETVVVS AIKPKTLRFR  60
PSGNGEASAM FSRGQVSANG NENKLEDNRN YVVYKPKAKV VSKATISALA NMLQGKVSVD  120
LQEPLKQTEV FLQTWSRQNR QNHPCPNLVQ KVPNFSELNA RSSETSRGDR SCLDGYNWRK  180
YGQKQVKGSE CPRSYYKCTH LNCPVKKKVE RSLDGQISEI VYQGEHNHPK PCLPPRRSSS  240
SASQKLGFAS SGSPHQEPLV YSQWRNRHQF SGRNDWSEGR VENRKGVSVS ANSEFAVPRA  300
GNSAAGASDS CCRSGECDET SKGFDGEIDD PKSKRRKNEH QTSETGVSED CSGEPRGQSQ  360
GSVDSDALED GFRWRKYGQK VVGGNPFPRS YYRCTSTNCR ARKHVERASD DPRAFITTYE  420
GKHNHQMPFR PPSSLLEHSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-29174428977Probable WRKY transcription factor 4
2lex_A3e-29174428977Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010529766.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010529766.10.0PREDICTED: WRKY transcription factor 44-like
SwissprotQ9ZUU01e-164WRK44_ARATH; WRKY transcription factor 44
TrEMBLA0A384L2V31e-162A0A384L2V3_ARATH; WRKY44
TrEMBLA7BI371e-162A7BI37_ARATH; WRKY transcription factor
STRINGXP_010529766.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83622740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-166WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  4. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  5. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  6. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]